Citrus sinensis (Valencia orange): 102624019
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Entry
102624019 CDS
T02983
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102624019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102624019
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102624019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
102624019
NCBI-ProteinID:
XP_006474951
UniProt:
A0A067F4A9
LinkDB
All DBs
Position
9:complement(join(28106543..28106556,28107041..28108238,28108717..28108938))
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AA seq
477 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA
ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR
AVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR
GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG
GNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPVSAPG
GGSASGYSAGSMGYGSGDGNYGLGGGGFGRTSSAGVGPTSSFAGSTSGYEGSYGDSYRSG
SGYGDPTWRSATPELDGSGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRGIAT
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggtaagctcttcattggtgggatttcttgggacacagatgaagaa
cggttgaaggaatactttagcaggtatggagaagtagtggaggcagtgatcatgagagat
cgagccacgggcagggcccgaggatttggctttgtggtgtttgcagatcctgctgttgct
gagagggtcatcatggataagcacatgattgatggccgcacggttgaagcaaagaaagct
gttcctagggatgatcaaaacatgttaaatagaaacacttctagcattcatagttccccc
ggcccaggacgcacaaaaaaaatttttgttggaggtttagcatctacagtcactgagagt
gactttaagaagtactttgatcagtttggtacaattactgatgtcgtagtaatgtatgat
cacaatactcaaaggccaagaggttttggcttcatcacttatgattctgaggaagcagtg
gacagagttttacataaaacatttcatgaactcaatggtaaaatggttgaggtcaagagg
gcagtgccaaaagagttctctccagggcccagccgtagctcaatgataggttataataac
tttggttttaatagacccaccaacctccttaatagttttgctcagagatacaatttgagc
cctgctggaggttttggagttagaatggatagcaggtttagccctcttgctactggtcgg
ggtggcatttctccatttggtggtgctggttatggagtaggtatgaatctggatgggggg
ttgagcccaagctatggtgggagttccaacttcagcaacagtctaggatatgggcgaatg
ctgggtccttttcctggtgggaattcaaacaggtttagcactcctgttggcttcagtggg
ggaaatggaagaggcgattctgttttgagctcaacaacttggaatgtctggggaaatggg
agccttaatagtgccacaaatcctgccagccccggtgctttcttgggctctggaagtggg
aactttgaagtttcatttggaaataatagtgtgaattggggtcctgtttcggctccagga
ggaggaagtgcttctggctatagtgctggaagcatgggttatgggagtggtgatggcaac
tatgggcttggagggggaggatttggaagaaccagtagtgctggtgtaggcccaacatca
tcatttgctgggtcaaccagtggttatgaggggtcttatggggactcgtatcggagtgga
tcaggctatggtgatccaacttggcgttctgccacccccgagctggatggttctggctca
tttagttacgggcttgggactgtatccacgaatgttgcagccaaaagttctgagggtttt
atcggaagttacaatgttacaagtagacaatcgactagaggaattgctacctag
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