KEGG   Citrus sinensis (Valencia orange): 102624626
Entry
102624626         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102624626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102624626
   03012 Translation factors [BR:cit03012]
    102624626
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102624626
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102624626
Translation factors [BR:cit03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    102624626
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C R3H DEAD HA2_C Ank_2 ATPase Ank_5 AAA_22 nSTAND3 AAA_19 HA2_N ResIII AAA_7 Rad17 AAA_16 ABC_tran Sigma54_activat NPHP3_N
Other DBs
NCBI-GeneID: 102624626
NCBI-ProteinID: XP_006484996
LinkDB
Position
4:join(18475799..18475958,18476238..18476328,18476506..18476818,18477008..18477082,18477278..18477322,18478165..18478255,18478355..18478413,18478728..18478886,18479238..18479290,18479624..18479657,18479795..18479884,18479991..18480992,18481481..18482575,18482696..18483130)
AA seq 1233 aa
MDQNRAAKMGKKKQKKAEQQQQKQQQQQSPTVAEATRIRISQILDGFLASKDEVYTFDAN
LSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKL
VLQDLFTHYPPDDGEPGEKLDANQSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRI
EKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK
GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLL
RLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRL
ILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPN
EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGK
GRVGDVCMLLSLGADCQLKARDGRTALQLAEQENQPEVAQIIKKHMENALSDSMKQQLLD
KYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTWDRLLANPFFRDTSK
FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYD
PYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEE
LCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLS
VHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQ
SDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDV
SSCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSF
KKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDDEDDDMSD
DDADENESDEDCMEIDDKTSGQHGENVMSSPDKSVTVLVDRWLYFGSTALDIAQIYCLRE
RLSVAILFKVTHPQKALPPVLEASMYAMASILSYDGFSGISLPAESVESLTSMIQATEID
KCPAARNRGTGQNPSNFLMSLMSPNTRQYFPLRDHKSRIPAHKGSTKGNQLSTQVAQPPL
FHGSPVVGSGSGTHIPPGPRGDSFKRPRGNWSK
NT seq 3702 nt   +upstreamnt  +downstreamnt
atggaccaaaacagagcagcaaaaatgggaaagaagaaacagaagaaagctgaacaacaa
caacagaaacaacagcaacagcaaagccctactgttgctgaagctacaaggattcgaata
tcccaaattctcgatggatttcttgcttccaaagatgaagtgtacacgtttgatgctaac
ttatcaaatcgcgagcgggctgtggtgcatgaagtttgcaagaaaatgggcatgacctct
aaaagttccgggcgtgggaagcaacgacgtgtttctgtttgcaaaagtaagaaaagggtg
gagacagataaagggaaggaaattctcccatcattgactttttcagaagggtcaaaactg
gttttgcaggacttgtttacgcactacccacctgatgatggggagcctggtgagaaattg
gatgcaaatcaaagtcggaagtctgataaaacgagagggaaaagagttgatattttctgc
aagcctaaaatgagcaaggcagaaattgcaatgaaggtggaatcacttacttctaggata
gagaaggacgcaaacttgagacagattgttgaagagaggtcaaaacttccaatctcttcc
ttcaaggatgtcattacttccacagttgattcaaaccaggttgtcctcatttctggtgag
acaggttgtggaaagacaacacaggtccctcaatttcttttggagcatatttggagtaag
ggtgagacatgtaaaatagtatgtactcaacctagacgtatctctgcaacttcagttgct
gagagaatatctgttgaaagaggagaaaatatcggagataatattgggtacaagattcgg
ctggaaagtaaaggtgggaagcactcgtcaattgtgttctgcacaaatggggttcttttg
agattgctggtctcccaaggtgttagcaggttgaaggaagcatctaataagccggcaaag
gatgatgtttctgcactaactcacattattgtggatgaaattcatgaaagagatcgctac
tctgatttcatgttggccattatcagagacatgctcccctcatatcctcatcttcggctg
atattaatgagtgctactctggatgctgatagattttctcaatattttggtggatgccca
gtcattcaagtccccgggttcacttatcctgtcaaatctttctatttggaggatgtactt
tccatcctgaaatctgcagagagtaatcaccttgattctgctagcttaattgtcccaaat
gaggaccctgaattaacggaggaaaataagagtactttagatgaagctatcagtttagct
tggtcaaatgatgagtttgatatgctcctagaattggtttctttggaaggatccccaaat
gtttacaactaccagcatactttgactgggctaacaccattaatggtgcttgctggaaag
ggccgagtaggtgatgtttgcatgctcctctctcttggtgcagactgccagctaaaggcc
agagatggaagaacagcgttacagttggctgaacaagaaaatcagccagaagttgctcaa
attattaaaaaacacatggaaaatgcactgtctgactccatgaaacaacaattacttgat
aaatatctagcaacagttaaccctgaacttattgatcttgttcttatagagcagttactt
agaaaaatatgcatggattcggaagatggagctatccttgtttttcttccaggatgggaa
gatataaataaaacctgggatagattgcttgctaacccctttttcagagatacttccaag
tttgttataatacctcttcattctatggttccctctgtgcagcaaaagaaggtgtttaaa
cgcccaccgcctggttgtcggaaaattattctttcaaccaatattgcagaaactgccatc
accattgatgatgttgtctatgttatagacagtggtcgaatgaaagaaaaaagttatgat
ccttacaacaatgtatcaactcttcaatcttcctgggtgtcaaaagcaagtgcaaaacag
agggcgggacgtgcaggccgctgtcaggctggaatctgttatcatctttattctcaactt
cgagcagcttctttgcctgatttccaggtcccagaaattaagagaattccaattgaggaa
ctctgtttacaggtgaagttgcttgatccaaattgtaatattgaagatttcttgcagaag
acattagaccctccagtttctgtaactattcgtaatgcaatcattgtccttcaggatatt
ggggctttgtcacttgatgaaaaagttaccgaacttggggagaagctaggttgtctttct
gttcatccattgatgagcaagatgcttttctttgccatactgatggactgtttagaccca
gctttgacactggcctgtgcttctgactatagggacccattcacccttcccatatcacca
aatgaaaagaagagagctactgctgctaaatttgagcttgcttcattgtacggtgggcag
agtgatcagctcgcagtcatagcagcttttgagtgctggaagaatgcaaaacagaggggt
caagaagcatggttttgttctcagtacttcgtctcctcaggtgtcatgaatatgctgctt
ggtatgcgtaagcagctccagacagagctaattaagaatgggtttattccagaagatgtc
tcgagttgtagtcataatgcacgtgtaccaggtataattcatgcagtcctcatggctggt
ttatatccaatggtagcgaggttgcgtccacctcataaaaatggaagacgatttgtagag
actgcaggtggtgctaaagttagattgcacccccattctcttaatttcaaattatcattt
aaaaaaactgatgattgcccgctaatggtatatgatgagataacccgtggggatgggggt
atgcatgtaaggaattgtactgttgttgggccactgccattgttactccttgcaacagag
attgctgttgctccagcacctgataatgaagatgatgatgaagatgatgacatgagtgat
gacgatgctgatgaaaatgaaagcgatgaggattgtatggagatagatgacaagacaagt
ggacaacatggagagaatgttatgtcatctcctgataaatcagttacagttttggtggac
cgatggctttattttggatcaacagcccttgatattgcccaaatctactgtttaagagag
agattatccgttgcaatcttattcaaagtaacacacccccagaaagctcttcctccagtt
cttgaggcctccatgtacgcaatggcctccattctatcatacgatgggttctctgggatc
tcactgcctgcagaatccgtggaatcattgacttcgatgatacaagcaactgagattgat
aagtgcccagcagcgagaaatagaggtacaggtcagaatccaagtaacttccttatgtca
ctcatgagtcccaatacccggcaatactttcctcttcgtgatcataaaagtaggatacct
gcacacaagggatcaacaaagggaaatcagttatcaacccaagtggctcagccaccgcta
ttccatggctccccggtagttgggtctggttcaggtacgcatatacctccaggccctagg
ggagattcatttaagcggccacgtgggaattggtctaaataa

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