Citrus sinensis (Valencia orange): 102624825
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Entry
102624825 CDS
T02983
Name
(RefSeq) uncharacterized protein LOC102624825
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102624825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102624825
03041 Spliceosome [BR:
cit03041
]
102624825
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102624825
Spliceosome [BR:
cit03041
]
Complex B
Other components
Prp19-related factors
102624825
Complex C
102624825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
TPR_19
TPR_12
ARM_TT21_C
NRDE-2
ARM_TT21
DUF5611
Motif
Other DBs
NCBI-GeneID:
102624825
NCBI-ProteinID:
XP_006467884
UniProt:
A0A067GK26
LinkDB
All DBs
Position
2:join(29463600..29465094,29465549..29465733,29465831..29466001,29467589..29468041,29468762..29469211)
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AA seq
917 aa
AA seq
DB search
MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY
KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK
ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV
SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA
RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL
GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY
VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGG
IKTTANHEDIELPDESDSEEEEKVEIAQKDVPSAVYGGLARKREGSEEDGDNSADANGKD
GESRLGALARLKRLKQA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggctatatcaaaagaattatacccttcagaagacgacctcttatatgaagaagagctt
ttgcgaaacccttttagtcttaagctctggtggcgctatttggtagcgaaacgtgaagct
ccttttaagaagcgtttcgtgatttatgagcgagctctaaaagcattgccgggaagctac
aagctgtggcatgcatacttaattgagcgcttgagcatagtaaagaacttacccatcact
cacccggagtatgaaacccttaataatacttttgaaagggctcttgtgacgatgcacaag
atgcccaggatttggattatgtatctggagacattaactagtcaaaagtttattactaag
gcacgcagaacttttgatagggcgctttgtgcattgcctgtgacacagcacgataggatt
tgggagatctatttgaggtttgtggagcaagagggaattccaatagagacttcacttagg
gtttacagaaggtacttgaagtatgatccaagccatattgaggattttattgagtttttg
gtgaagtcaaagctttggcaagaagcggcagagaggttagcttcagttttgaatgatgat
cagttttattcgataaaggggaagactaaacacaggttgtggttagagttgtgtgattta
ttaaccacacatgcgactgagatttcggggcttaatgtggatgccataattaggggtggg
attaggaagttcacggatgaggtggggaggctgtggacttcattggctgattattatatt
aggagagagttgtttgagaaggcgagggatatctttgaggaagggatgatgacagtggtt
actgtgagggactttagtgtgatttttgattcatactcacagtttgaggagattatggtt
agtgctaagatggcgaaaccagatttgagcgttgaggaggaagaagatgatgaggagcat
ggttcagcagaagatgaagatattcgattggatgtgaatttatcaatggctgagtttgtg
aagaaggttctcaatggattttggttgcatgatgtcaaggatgtggatttgaggttggcc
cgattggagcatctgatgaatagaagaccggaactagctaatagtgttctcttgaggcaa
aatccgcataatgtggaacagtggcatcgaagggtcaagatatttgagggtaacccaact
aagcagattttgacatatacagaggcagtgcggactgttgatcccatgaaagcagtgggg
aagccccacactctatgggttgcttttgctaagttgtatgagacttacaaagatattgcc
aatgcaagagttatttttgacaaagctgtgcaagttaattataaaactgtggaccacctg
gccagcatttggtgtgagtgggcagaaatggagttaaggcataaaaatttcaaaggagca
ttggagctgatgaggcgtgccacagcagagccatcagttgaggtcagacgaagagtggct
gctgatggaaatgaacctgttcagatgaagctgcataaatccttgaggctttggaccttt
tatgttgacttggaggagagcctgggtaacttggagtcaacacgtgctgtttatgagcgc
atactagatttaaggattgccacgcctcagattattatcaactatgcactgcttctggaa
gagcataaatactttgaagatgcattcagagtatacgaaagaggtgtcaagatttttaag
taccctcatgttaaagatatatgggtcacatacctctcaaagttcgttaagagatatggg
aagacaaaacttgaacgggcaagagagttgtttgaaaatgccgttgaaacggcccctgct
gatgcagttaaacctttataccttcaatatgctaagctagaggaggattatggtctagct
aagcgagctatgaaggtctatgatcaggcaactaaggcagttccaaaccatgaaaaattg
ggcatgtatgaaatatacattgctcgagcagctgaaatttttggtgtcccgaaaacaagg
gaaatttatgagcaagcaatagaatccggacttccagacaaggatgtgaaggcgatgtgc
ttgaagtatgctgaattagaaaagagcttgggagaaattgacagggcccgtgggatatat
gtgtttgcatctcaatttgccgatccaagatctgatactgaattctggaatagatggcat
gagtttgaggtgaaccatggaaatgaagacaccttcagagaaatgttgcgtattaagcga
agtgtttcagcaagctatagccagacgcattttattcttccagagtatcttatgcagaaa
gatcaaagattatccatcgatgatgcaaaggacaaattgaaacaggccggggtgcatgaa
gatgaaatggctgctctggaaaggcaattagcccctgcagccaacaatggtaatgccaag
gatagcagcagaaaagtgggatttgtgagtgctggagtggagtcccaaactgatggaggt
ataaaaaccacagcaaatcatgaagacattgaactcccagatgaaagtgattcagaagag
gaagagaaagtggaaattgctcaaaaagatgttccatcagcagtatatggaggtctagcc
cgaaagagggaagggagtgaagaggatggagataattctgctgatgctaatggaaaagat
ggtgagagtcgccttggtgcattggcaagattaaagagactgaaacaagcttga
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