Citrus sinensis (Valencia orange): 102624841
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Entry
102624841 CDS
T02983
Name
(RefSeq) zinc finger CCCH domain-containing protein 41 isoform X1
KO
K13192
RNA-binding protein 26
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cit01009
]
102624841
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102624841
03041 Spliceosome [BR:
cit03041
]
102624841
Protein phosphatases and associated proteins [BR:
cit01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102624841
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102624841
Spliceosome [BR:
cit03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102624841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
RRM_Nup35
DUF4407
PHM7_cyt
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
102624841
NCBI-ProteinID:
XP_006470267
LinkDB
All DBs
Position
2:join(5843796..5844578,5845472..5846716,5847356..5847700,5848175..5848642)
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AA seq
946 aa
AA seq
DB search
MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR
SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS
QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN
ISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFC
LRGDMCPMEHGVNRIVVEDVQSLSQFNLTVPLPSAPLLATPAGPGLLSSVGAASTTLMNS
KGVHNKGSKTGLMDDGMGLNGAYSDSAAAGGADLYDPDQPLWNNNGPDTSPGLAALHSSN
DETESLLNEDSSNNHHLRASDSADNDLPVRNAGTAAVSQNTSMSVWGRIGSSKNRSNVKE
KIDATLNSSDYLENETKEDREALPSLQGSYHRGKRIIEGDAIQKNMDPSTKAQNDHMRNI
RKPSQKALRTLFVNNVPLKSNRREALLSHFQKFGEVVDIYIPLNSERAFVQFSKREEAEA
ALKSPDAVMGNRFIKLWWANRDSIPDDGISGVNVSMTSHGMTAASFPAHTSVTNKVKDNN
LQSTTLKGGNIVPAADVSLPAPDHPTVITNSPKPPPPLQKKLDNLEQLKEELRKKQELLD
QKRNDFRRQLDKLEKQAGGKSDVVSEKAAKRLKVGIAADVAKATARSSDSTAAVASPRAE
MMADKNKLVDIVLSPSQKVNTAMVLQESTSFKQQIRPLAPAGPPFLMNRYKLDNRPTAFR
IIPPLPVGFADVAVLKEHFSSYGDLASVELEDGEVLEGDNGSDASKNCQVRVSFTTRRSA
ERAFLSGKSWQGHDLQFTWLMPSSSSNDLGNKEKTSTFLKGSSDTDVQKEEKLSSVVSQE
AAASGNAESENSERKSSVEHAELQEVSQPSPTPMSAEEESPKDNVC
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggagcttaaagtttcatcacctaagccagcaagtctttctcctccagattgcaccagt
gatcctgaagagaaggaactcagtgatgaggatgatgacgaccgcaaccataagcatcgt
aggcgggagacacggtcacaatctttggagagagattctttggatcaagtatatatgaga
tcatatagaaagcgcaacaaaccttttgaaaatgggcactctttcagggagaatgaatct
caagcaagtgaatcctggaaaaactataacattcctcccctagagaaggacttcacagca
aagtttgagagaagacgccccggttttgcatcgctatcccgagcacctttggatttgagt
caaagaatcaggggaaacaatacattttatggggaccttgggcctggaagaggaagagga
agggactctgcttcctggaatcaacgtgatactagattcagctctgttgatattgcttct
caaatacttcagccagcatccatgccaccaagtcgctttgctggaagggggcttcctaat
atttcaaattcgcagaatgcatcatttgcatttggattaattccaggagtaccaaatggt
ggcttagatacactcccctccattggtttgcaggggacactcagaccaccactgaactcc
tcgttaaatatgggcatttcacgccaacgatgtagggattttgaggagcgaggattttgt
ctcaggggggacatgtgtccaatggagcatggagtcaatcgtattgttgttgaagacgtt
cagagcctttcacaatttaacctcactgttccactcccaagtgcaccgctactagcaaca
cctgctggaccaggtctgctatcttcggttggtgctgcttcaacaacattgatgaatagt
aaaggagtgcataacaaaggtagcaagactggattgatggatgatggcatgggcttgaat
ggtgcgtattctgattctgcagctgcaggcggagctgatttgtatgatccagatcaaccc
ctgtggaataacaacggtccagatacatcacctggccttgcagcactacattcatctaat
gatgaaactgaatccttgttgaatgaggattcatcaaataatcatcatctgagggcatct
gatagtgctgataatgatttgcctgtgagaaatgcggggactgctgctgtttcacagaat
acaagtatgtctgtttggggtagaataggcagttcaaaaaatagatcaaatgtgaaagag
aaaattgatgcaacgctaaattcatcggattatcttgagaatgaaacaaaggaagatagg
gaggcattacccagccttcagggtagttaccatagaggaaaacggattattgaaggggat
gctatccaaaagaatatggatccatctaccaaggcacagaatgatcatatgcgtaatatc
cggaaaccatctcaaaaggcattgcgtaccctatttgtcaataacgttcccctgaaaagt
aacaggagagaggctcttctttctcattttcaaaagtttggagaggttgtagacatttat
attccattaaatagtgaacgagcttttgtacagttctccaaacgagaagaggcagaagct
gctctaaagtctcctgatgctgttatgggtaatcgatttatcaagctttggtgggctaat
cgtgacagcataccagatgatggaataagtggtgttaatgtatccatgacttctcacggt
atgacagctgcttcatttccagcgcatacctctgttactaacaaagtgaaagacaataat
cttcaatccaccactctgaagggaggaaatattgttcctgctgctgatgtttctctgccc
gctcctgatcaccctactgttattacaaatagtcccaaacctccacctccattgcaaaag
aagctggacaatcttgagcagttgaaggaggaactccgtaaaaagcaggaattgttggat
cagaagcggaatgacttccgccgtcaactggacaaattagagaaacaggctggaggcaag
agtgatgtggtgtctgagaaagctgctaaaagacttaaagtgggaatagcagctgatgta
gcaaaagcgacagcaaggtcctctgattctactgcagctgtggcatcaccacgtgctgag
atgatggcagacaagaacaaactagtggatattgttttgtctcctagtcagaaagtaaac
acagccatggtgctgcaagaatctacaagcttcaagcagcagattcgtccattagcacct
gcagggcctccatttttgatgaatagatacaaattggataaccgacctacagcatttaga
attattccacctttacctgtgggttttgcagatgttgctgtcttgaaagagcacttctca
tcatatggtgatcttgcttctgttgagttggaagatggtgaagtccttgaaggtgataat
ggatcagatgcatcaaaaaattgccaagttcgtgtaagttttacaacacgccgttcagct
gagagggcatttcttagtggtaaaagctggcaaggccacgatttgcagtttacatggctg
atgccaagcagttctagtaatgacctgggtaacaaagagaagacatcgacttttcttaag
gggtcttcagatactgatgttcagaaagaagagaaactgtcatctgttgtctcccaggaa
gccgcagcatcaggtaatgctgagtctgaaaattcagagagaaaaagtagtgttgagcat
gcggagttgcaggaagtttctcagcctagtccgactccgatgtctgctgaggaagagtca
cctaaagacaatgtttgttga
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