KEGG   Citrus sinensis (Valencia orange): 102625105
Entry
102625105         CDS       T02983                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102625105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102625105
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102625105
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     102625105
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML_2 MA3
Other DBs
NCBI-GeneID: 102625105
NCBI-ProteinID: XP_024950960
LinkDB
Position
2:complement(join(32841290..32841598,32841936..32842061,32842234..32842398,32843122..32843292,32843858..32843977,32844159..32844518,32844943..32846553,32846780..32846905,32847379..32847597,32847710..32847866,32847964..32848013,32848100..32848873))
AA seq 1395 aa
MASNQAGGGGGGVTGGGGSGGFDMNKLLKPSSNPMNMIPNSTNLTTSPSFPSPSSVSSPS
PYLTPSSSYPPPTGPYPPYHYYPSPPPPQHQLFQQQQQQQQNRPQILYPQQIPQPPSPSH
NPNPNSTSSSSSGNNLLMAFFANQHQHQPPSPTLPPPSDSTVVIPSAPPVRLRSSKVPKG
RHLIGNHSVYDIDVRLDGEVQPQLEVTPITKYISDPGLVLGRQIAVNRNYICYGLKLGNI
RILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEDKPQIL
GKIVVAIQILADGDSVHPRVCWHPHKQEILMLAIGNRILKIDSNRVGKGERFSAEEPLKC
PVDELINGVQLVGKHDGEITELSMCQWLTTRLASASLDGTVKIWDDRKSTPLAVLRPYDG
HPVNSVTFLIGPHPQHIVLITGGPLNRELKIWASAEEEGWLLPSDIESWKCTQTLELKSS
AELRLEDAFFNQVVALNRAGLFLLANAKKNAIYAIHMDYGPNPASTRMDYIAEFTVTMPI
LSLTGTTTDASPDGEHIVQIYCVQTQAIQQYALDLSQCLPPPLENAELEKTDSNATRAFD
VANPDGSASLESSHGTKSADVGTTSLVPPILSSSTESVPIASRPEGLPSSEVSSLSENAS
GAETKPSALPSGNAENIHSASPPLPLSPRLSRKSSGYRSPSNGFEPSAQPNEHGSEQAVT
DYSVDRRTNTSKEKMADVPSSGDNLWKGDRNSAQNDISMVPDPPVVFKHPTHLVTPSEIL
STAASSSENSQFSQRMNVGEAKVQDAVVNNDAEGVEVEVKVVGETGGLKNEFNSRESHAT
VTEKKEKSFYSQASDLGIQMARDCCMGTYNVDGIRQASDVEAQDRPSNNGEVEEQDMSKD
TPAKVGASEASMVILQSPSPAAKGRKQKGKNSQISGTSSPSPSPYNSADSSNEPACISGA
PSTDATMSQLLAMQDMLNQMMSTQKEIQKQMNSVVSAPVNKEGKRLEASLGRSIEKVVKA
NSDALWARFQEENAKHEKLERDRMQQITNLITNTINKDLPAILEKTLKKEIAAVGPAVAR
AISPTLEKSISSAIMESFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQTSGKQALQD
ALRSNLETSIIPAFEMSCKAMFEQIDSTFQKGLIKHTTAIQQQFETAHSPMAIALRDAIN
SATSITQTLSGELADGQRKLLAMAAAGANTKTGTSLVTQSSNGPLAGLHEMVEAPLDPTK
ELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGVLLALLQQLA
CDISKETPRKLAWMTDVAVAINPADPMISMHVRPIFEQVYQILGHQRNLPSTSASEANSI
RLLMHVINSVLMSCK
NT seq 4188 nt   +upstreamnt  +downstreamnt
atggcttcaaatcaagcgggaggaggaggaggaggagtcacgggcggtggaggcagtgga
gggtttgacatgaacaagctattgaaaccaagttcaaatccaatgaatatgattccaaac
tcaacaaatctaacgacgtcaccgtcatttccgagtccatcttcggtttcatcaccgtct
ccgtatttaacaccgtcttcgtcttatcctccaccaactggtccatatccaccttaccac
tattatccatcaccaccgccacctcagcaccaactcttccaacaacagcagcagcaacaa
caaaacagacctcaaatcttataccctcaacaaattccacagcccccttccccttcccat
aaccctaaccctaattccacttcttcttcttcttctggtaacaaccttcttatggccttc
ttcgccaatcaacatcaacatcagcctcctagtcctactctccctccaccgtccgattcg
acggttgtgattccttccgctccgcctgttagattgcgcagcagtaaggttcccaaagga
aggcatttgattgggaatcattcggtttatgacattgatgtcagactggacggggaagtt
cagccgcaacttgaagttactcctattactaagtatatatcggatcctggccttgttctt
ggccgtcagattgctgttaataggaattacatttgctatggtctcaagcttggtaacatt
cgcattcttaatatcattactgctctgagatctttgcttcgtggccacactcagagagta
acagatatggctttctttgccgaggatgttcatcttttggctagtgcaagtgttgatgga
cgcttttttatatggaacattaccgaaggccctgacgaggaagataagcctcaaattttg
ggtaaaattgttgttgccattcagatacttgcagacggggattcagtccatccaagagtc
tgttggcatcctcacaaacaagaaattttgatgttggcgattggaaatcggatccttaag
attgatagcaatagagttgggaaaggcgaacggttttcagccgaggaacctcttaaatgt
cctgttgatgaactgattaatggggttcagcttgttggtaaacatgatggtgaaattacg
gagctgtcaatgtgccaatggctgactacccgtttagcttcagcttcattagatggcacg
gtgaagatttgggatgaccgtaagtctacaccacttgctgtgttgagaccatatgatggc
catcctgttaattctgtaacatttttgattggtcctcatccacagcacattgtgcttatc
acagggggtcccttgaatcgggaactgaagatatgggcctctgctgaggaggagggctgg
ttgttgcctagtgatattgaatcatggaagtgcactcagactttggagctgaagagttct
gccgaactcaggcttgaggatgctttcttcaatcaagttgttgcgcttaaccgcgcaggc
ctgtttctgctagcaaatgccaagaagaatgctatctatgccatacacatggattacgga
cctaatcccgcctcaactcgcatggattacatagctgaatttacggttacaatgcctata
ttgagtcttactggtactacaaccgatgcttccccagatggagaacacattgtacagatt
tactgtgttcaaacacaggctattcagcagtatgcattggacttgtctcagtgcctgccc
ccacctttagagaatgcagagttggagaaaacagactccaatgctacccgtgcttttgat
gttgctaatcctgatggttctgccagtttggaatcatctcacgggactaaatctgccgat
gtaggtactacttctttggtgccccctatactttctagcagcactgaaagtgtccccata
gcgagccgtcctgaaggtttgccttcttctgaggtttctagtttgtcagaaaatgcttcg
ggggcagagactaagccaagtgctctgccatctggtaatgctgaaaatatccactcggca
tctcctcctcttcctttgagtcctagattatctcgtaaatcatctggttatagaagtcca
tcgaacggttttgagccatctgcacaacccaatgaacatggtagtgagcaggcagtaact
gattattcagttgaccgtagaacaaatacttccaaagaaaaaatggctgatgtgccttcc
tcaggtgacaatttgtggaagggtgatagaaatagtgcgcaaaatgacatttctatggtt
cctgatcctcctgtagtgtttaaacaccctacccatctcgtgactccatcagaaatttta
tctactgctgcttcatcatctgagaattctcagtttagtcagcgcatgaatgttggagag
gcaaaggttcaagatgcagttgtcaacaatgatgcagaaggtgttgaggtagaggttaaa
gttgttggtgagacaggtggtctgaaaaacgaatttaattctagggaatcccatgctact
gttacggagaagaaggagaaatccttttattctcaggcctcagatcttggcattcagatg
gctagagattgttgtatgggaacatataatgtggatggaattcgacaggctagtgatgtt
gaagcacaagatagaccttctaacaacggagaggttgaagagcaagacatgtcaaaagat
acacctgcaaaggttggtgcatcagaagcttccatggtgattctgcaatccccttcccca
gctgccaaaggtagaaaacagaagggaaaaaattctcaaatatctggtacatcttcacca
tcccctagtccttataactccgcagattcctccaatgaaccagcttgcatttcaggtgcc
ccatccactgatgctactatgtctcagttattggctatgcaagacatgctcaaccagatg
atgagcacgcaaaaagaaatccagaaacagatgaattcagtcgtgtctgccccagttaat
aaagaaggcaaacgactggaggcatcattgggtcggagcattgagaaagttgttaaggct
aactcagatgccttgtgggctcgtttccaagaagaaaatgctaaacatgagaagttagaa
cgagaccgcatgcagcagataacgaacttaatcaccaacactataaataaggacttgcct
gctatactcgagaaaaccttaaagaaggaaatagcagctgttggaccagctgtagctcgt
gcaatatctccaactttggaaaaaagcatatcttcagctattatggagtcattccagaaa
ggagtgggtgaaaaagcagtgagtcaactagagaaatcggttagctcaaaactggaaact
accgtggccaggcaaatacaagcacagtttcaaacttcgggcaagcaagctcttcaggat
gcattgcggtctaatttggaaacttcaattattccagcatttgagatgtcatgcaaagca
atgtttgagcaaatcgattctacatttcagaagggccttatcaaacatacaactgctatt
cagcagcagtttgaaactgcacattctccgatggccattgctttgagggatgcaattaat
tcagcaacgtcaattactcagaccttaagtggagaattggctgatgggcagcgtaagctc
ttagccatggcagcagcaggagctaacactaaaacaggaacttccttggtcactcagtca
agtaatggaccattagctggtcttcatgagatggttgaggcgcctttggatccaacaaaa
gaactgtctaggttgatagctgaacgcaaatatgaggaggcattcacaggagcactgcac
agaagtgatgtgtcaattgtatcctggttatgctcccaggttgatctacctggaattttg
tcaacggtaccactccctctaagtcaaggagttctgctggcccttcttcagcaattggct
tgtgatatcagcaaggaaacaccgagaaagctagcgtggatgacagatgttgcagtagcc
ataaaccctgcagatccgatgatatcaatgcacgtgcgaccaatctttgagcaggtgtat
cagatactggggcatcaacgaaacctacccagtacctctgcttcagaagcaaatagcatc
cggcttcttatgcatgtcataaactccgtgttgatgagctgtaaatga

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