Citrus sinensis (Valencia orange): 102625162
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Entry
102625162 CDS
T02983
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102625162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102625162
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
102625162
Prokaryotic type
Archaeal type
TFB
102625162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
TPR_NPHP3
WHD_GDS1
DUF7573
Motif
Other DBs
NCBI-GeneID:
102625162
NCBI-ProteinID:
XP_006476712
LinkDB
All DBs
Position
3:complement(join(2460270..2460400,2460470..2460546,2461047..2461135,2461279..2461409,2461498..2461627,2462492..2462516,2463342..2463697))
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AA seq
312 aa
AA seq
DB search
MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG
GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL
GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT
KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLRRFCSNLGMTNQAVKAAQEAVQKSED
LDIRRSPISVAAAVIYIITQLSNDTKPLKEISIVTRVAEGTIKNVYKDLFPHLARIIPDW
FANEEDMKNLKL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcgtactgcgcagattgcaagcgactgacggaagtggtgttcgaccactcg
gccggcgacaccatttgctctgagtgcggtctcgtcttggaggcctactccgtcgacgaa
acctccgaatggcgtattttcgccaacgagtcctccgatcacgaccccgttcgtgtcggt
gggcccctcaaccctctcttgagcggcggcggcctatccactgttattgccaagcctact
gctggcggctccactgagcttttgtctggctcccttggcaagttgcaggcccgcagttcc
catcctgataggaaccttattcaggccttcaagtctatttctgccatgtctgataggttg
ggacttgttacaaccataaaggatcgagctaatgaaatctataagaaggtagaagatcaa
aaacctcttagaggacgaaatcaggaagcaattgtggctgcttgcctctacattgcttgc
cgacaagaaaacaaacccaggactgtgaaagaattttgttctgttgctaatgggacaaca
aagaaagaaataggacgggcaaaagaattcatcgtgaaacacctagaagcagaaatgggt
caatctgtggaaatgggaactatacatgcttcagattatctgagacgtttttgttccaat
cttggaatgacgaatcaagctgttaaggctgctcaagaggctgttcagaaatctgaagat
ctcgacataaggagaagcccgatctcagtggcggcagctgttatttacatcataactcag
ctatcaaatgacacaaagcctctcaaagagatctccattgttacgagagtggcagaaggg
accatcaagaatgtctacaaagatcttttccctcatttggcacggataataccagactgg
tttgccaatgaggaagatatgaagaatctaaagctctga
DBGET
integrated database retrieval system
