Citrus sinensis (Valencia orange): 102625519
Help
Entry
102625519 CDS
T02983
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102625519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102625519
03036 Chromosome and associated proteins [BR:
cit03036
]
102625519
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102625519
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102625519
PBAF complex
102625519
GBAF(ncBAF) complex
102625519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
102625519
NCBI-ProteinID:
XP_006493240
LinkDB
All DBs
Position
4:complement(join(16310401..16310562,16310671..16310834,16311197..16311240,16311356..16311525,16311973..16312467,16313183..16313754,16313855..16313924))
Genome browser
AA seq
558 aa
AA seq
DB search
MEMPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD
FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSS
LGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVVVAGETGVKLPPL
TSYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRF
SDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEF
MMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESEQNGDAATEEPP
AKRKRIAPLSDGGSSLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSYPREIFDGDEDY
LANGLLSPTMVSDPERALQVDASKMEENQSETQDASSEKNDVPLNLRIRTATATALGAAA
ANAKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEE
RIDVLERALKTGVSKWRS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagatgccacaatatgacccgaatactaaacccgaattcgaactctacaccatccca
agtcactccagttggtttagatgggacgacattcacgaaaccgagcgtactgccctaaaa
gagttcttcgacgggagctcaatttcaagaacaccgaagatatacaaagagtacagagat
tttatgataaacaagtacagggaagagccttcgaggaggctgacattcacccaagtgaga
aaatcactggtgggtgacgttagtttgctccacaaggtctttagattgttggacgagtgg
ggtttgatcaattttggtgcagtatcgcgtggtgatgatagtgataatagagacagcagc
ttaggggatacagagcttaagaatcaagttaagattgaggaaggagcccccaatggtgtt
cgtgttgttgcattgcccaattcattgaaacccatttcggttccaaattctggagcagat
ggtagtggcaatggtaaagtggtagtggcaggtgagaccggggttaaattgcctcccttg
acttcgtatttggatgtttttggtgatttggtgaagttgaaggggtttaagtgcggtagt
tgtggcgagcagtgtaattccggatgctatgagtatagcaagggtagttttgtaatctgt
gaaaagtgcttcaaaaatggaaattatggggaggacaagtccaaggatgatttcaggttt
agtgacctaggaggaaacagtcttactcatggagctacttggactgaggcagaaactcta
cttcttttggaatctgttatgaggcatggagataattgggagcttgttgctcaaaatgtt
ccgaccaaaagtaaacttgattgtatttcaaagcttattgagctgccctttggggagttt
atgatgggttctgcacatgaaatgaatagttctagttgccccaccgggagtctgaatagc
ttaaaagaaggacagtcagcttcatctgagaatcaaaatgatgtcaaaatggaggatcaa
gttcacgatcagatgaatgagagcgagcaaaatggggatgctgcaactgaagaacctcct
gcaaaaagaaaacgcattgctcccctttcagatggtggtagctcactgataaaacaggta
gctcacatctcaactatggttggcccacacgtaactgctgctgcagctgaggctgcagtt
gcagcactatgtaatgaaagctcatatccaagggagatatttgacggtgatgaggattat
ctagctaatggattattgtctcccactatggtttcagatccagagagagcacttcaggtt
gatgcttcaaagatggaggagaaccaatcagaaactcaggatgcatcctcagagaagaat
gacgtacctctaaatttacgaattagaacagcaacagcgactgctcttggggcagctgct
gctaatgccaagttattggctgaccaggaagacagggagattgagcatttagtggctatc
ataattgagacacagatgaagaaattgcactccaaaatcaactactttgatgatctggag
ctgataatggagaaggaatataacgagatgatgcaactaaaagaatgtctcgtagaagag
aggattgacgtcttagaaagggctcttaaaactggtgtatctaaatggagatcatag
DBGET
integrated database retrieval system
