KEGG   Citrus sinensis (Valencia orange): 102625916
Entry
102625916         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102625916
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102625916
Enzymes [BR:cit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102625916
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     102625916
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 102625916
NCBI-ProteinID: XP_006478802
LinkDB
Position
3:complement(join(36484192..36484693,36485019..36485308,36485608..36486552,36487189..36487480,36487908..36488791,36489373..36489585,36490057..36490527))
AA seq 1198 aa
MGASSNAKEDIAMSSKGENISGQDDMDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFN
EYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMKFGQVTLDK
PSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQLQVYTQKRVTSDKFKTGREQYIQKE
VLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKR
LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL
GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPP
GESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL
LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK
RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE
NCGLVKNLGVTGLISTSILEPIIEQLFNSGMEKLADDASYSLEGKFKVFVDGDWIGVCKD
SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGK
NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC
GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL
GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA
EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA
DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES
QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT
PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG
PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV
ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgggggcatcatcaaatgccaaggaagatatagccatgagtagtaagggtgaaaatatt
tctggtcaagatgatatggattcagatgataacgggtttacagacccaaccagcctatgt
gatcttggagaggagtttctgaaaacattctgtagaaaggcagcagtgtctttctttaat
gaatatggtctggttagtcaccagatcaactcatacaatgagtttattaagaatggtctc
cagaaggcctttgattcatttggagagacaatagttgagcctggttatgacccgtcaaag
aaaggagagggtgagtggcgatatgcttccatgaagtttgggcaggtcactcttgataag
cctagtttctttgccggtaatggaggtgatgaacatgatatgtttcctaggcatgcaagg
ttgcagaatatgacatattcatctaggatgaaagtgaaggttcaacttcaggtatacact
cagaaacgtgtcacaagtgacaaattcaaaactggaagagaacaatatattcagaaggag
gttttaagcgatgaaactacgaacatcattattgggaggattcctgtaatggtgaagtct
gacctctgctggatgaagggagtggagaaaggtgattgtgattttgatcacggtggatac
tttattatcaaaggtgcagagaaggtttttgttgcacaagagcaaatttgtttgaaaagg
ctttgggtttcaaatagtatgggctggactgtagcctacaagtccgagaataagagaaac
agattgattgttagactggtagatatgtccaaatttgaagatattaaaggaggcgagaaa
gtgctttcagtatatttcttgtcaacagagatccccatatggatcttgttttttgcactt
ggcgtatcatcagacaaagaaattgtaaatctcattgattttacttgtgaggactgcagc
attttgaacatattgtttgcctcaattcatgatgctgacaacaagtgtgatgaattccgg
aaagggaggaatgctctcaagtatgttgataaactcattaagggaaccacatttccacca
ggggaaagtactgaagagtgcatgaacacatatctgttcccctctctccatggcaccaaa
cagaaggcccgctttcttggttatatggtgaagtgtctcttacaggcctatagtggtcgt
agaaaatgtgataatagagatgactttagaaacaagaggttggagctggctggtgagctg
ctcgagcgagagctcaaggtacacattgcacatgctcggaagcgcatggcaaaggctttg
cagagagatctgtacggtgatcgcacagtgcgtccaattgaatactatctggatgcatcc
atattaaccaatggtctttcaagggccttctcaacgggagcgtggtcacatcctttcaag
aggacagaaagaatttctggcatagtggcgaatcttggacgagcaaatccattgcagaca
cttgttgatttgaggagaacaagacagcaggttcagtatacagggaaggtgggagatgct
agatacccgcatccttctcactggggtaagatttgctttctctctaccccagatggtgaa
aattgtgggcttgtgaaaaatttaggtgtcactggactgattagtacaagcatattggag
cccataattgagcagttgtttaatagtggaatggaaaagctggcagatgatgcttcctat
tcactggaaggaaagtttaaagtgtttgttgacggagattggattggagtttgtaaggat
tccctctcatttgtttctgagttaagaaggaagcgtcgcaggaaggagttacccactcag
gtggaaatcaaaagagatgaactacaaagtgaagtacggatatttatggatgctgggagg
attttacgccctcttttggtggttgaaaatatgggcaagattaaatccctggaggggaaa
aattacacctttcaagcccttttggaccatggaataattgaacttgttggaactgaagaa
gaggaagattgctgtactgcatggggtattaaatacctcttaaaggacattgaagataaa
aaacccataaagttcactcactgtgaacttgacatgtccttcttgcttggtttgagttgt
gggattatcccatttgcgaaccatgaccatgcaaggagggttctgtatcaatcacagaag
cattcttcccaggctataggttttccaacaaccaatcccagcatcagagttgatactcta
tcacaccagcttttctaccctcaaaggcccctttttcggacaatgatttcagattgtctt
ggaaaaccaggttatggccataatcatatactgccaaggccagagctctacaatgggcag
aatgcgattgtggctgtgaatgtccacttgggatacaaccaagaggactccctggtgatg
aaccgtgcctctctggaacgtggtatgtttcgatctgagcacattagaagttacaaggct
gaggtcgataacaaagagatgcaggtgaagaggcggtcatctgatgatatggtgaatttt
ggaaagattcaaagtaaaattggccgcgtcgacagcctagatgatgatggctttcccttc
attggtgctaacctccagagtggtgacatcgtgattggaaagtatgctgattctggggct
gatcacagtataaaactgaagcacactgaacggggaatggttcagaaagtcgtgctatct
tctaatgatgatggaaagaatttttctgtggtatctctgagacaggttcgttccccatgt
cttggagacaagttctctagcatgcatgggcagaaaggtgttttgggctttttggagtct
caagaaaatttcccttttaccatacaaggcatagttccagacattgtaataaatccacat
gcttttccttcaaggcaaactcctggtcaacttttagaggctgctttaggaaagggaatt
gctgctttaggaaaggggatttgcagtggcttgaaaagatatgccactccttttgctact
ccctctgttgatgcaatcactgagcaacttcacagggctggattttccaaatggggaacg
gagagactttatgatggccgaactggtgaaatggttcgttcgctcatatttatagggcca
acattttaccagcgacttattcacatgtctgaggacaaagtcaagtttcgaaacactggg
ccagtccaccccctcacccgacagccagtggcggacaggaagcgatttggtgggatcaag
tttggtgagatggagcgtgactgtcttatagcccatggtgctgctgccaacttgcatgaa
cgcctgtttacgctgagcgactcctaccagatgcatatttgtaggaaatgcaagaacgtt
gcaaatgtgatccaacgggtagtgggtggtggacgtaaggttcggggcccctattgccgt
atatgtgattcaggagatgacatagttaaggctaatgtaccttatggagcgaagttactt
tgtcaagaacttttcagcatgggcatcactttaaagttcgacactgagttctgttga

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