Citrus sinensis (Valencia orange): 102626079
Help
Entry
102626079 CDS
T02983
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03030
DNA replication
cit03420
Nucleotide excision repair
cit03430
Mismatch repair
cit03440
Homologous recombination
cit03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102626079
03420 Nucleotide excision repair
102626079
03430 Mismatch repair
102626079
03440 Homologous recombination
102626079
03460 Fanconi anemia pathway
102626079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cit03000
]
102626079
03032 DNA replication proteins [BR:
cit03032
]
102626079
03400 DNA repair and recombination proteins [BR:
cit03400
]
102626079
Transcription factors [BR:
cit03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102626079
DNA replication proteins [BR:
cit03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102626079
DNA repair and recombination proteins [BR:
cit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102626079
MMR (mismatch excision repair)
102626079
DSBR (double strand breaks repair)
HR (homologous recombination)
102626079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF936
zf-CCHC_5
zf-CCHC_3
zf-CCHC_2
BRCA-2_OB1
zf-CCHC_4
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
102626079
NCBI-ProteinID:
XP_006471343
LinkDB
All DBs
Position
5:join(17987829..17988124,17988264..17990544)
Genome browser
AA seq
858 aa
AA seq
DB search
MAINLTEGAISLICKGDVTTDNHLMPVLQVMDLKLVVSKQQQQQQQQQQRFRMVLSDGSL
SQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPV
PAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYF
KPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVP
SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA
VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ
FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL
WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK
EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD
NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT
AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK
STVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGTIGSRQTA
PVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSTMN
CPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGI
GISAAGYRGAPRQQVGGF
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggcaataaatttgacggaaggagcaatatcgttaatttgcaaaggcgacgtgacgacg
gacaatcacttgatgccggtgcttcaagttatggatttaaagctcgtcgtttcaaagcag
cagcagcaacaacagcagcagcagcagcggttcaggatggtgttgtcggacgggtcgctg
agccagcaagggatgctggctactcagagaaatgagttggtcacttctggtcttttgcag
attggttccgttgttcgattaacaaagttcacctgtaacgtcatccaaaatcgcatgatt
gttattgttatggatttggatgtgataattgataaatgtgacccgattgggaaacctgtt
ccggcacaaagaccctcttcaaatgaacaaccagggtcggttactggaaatcctcaatca
aatgcgactggggtgtctctgcaacaccataataacactagagtgagtcaattgcctggc
gacactgatgctgtccccgcggcaagacatgttggttcaaatctgcctcccaattacttt
aaacccgaggttggtgctgggtctgggtcctttagtaatcagagcgcaagtttttccaac
cctagaccagaattttcccggccttatgcaagcaattatgcccgtacacctcaagcaccc
tatatgcagtcaccttcaatgtacgctaacagaggactggtgggtaagagtgaagttcct
tccaggataattccaattgctgctctgaatccttacatgggaaagtggacaatcaaggcg
agagtgacagccaaaggtgagcttagacactataacaaccaacgtggcgatgggaaagta
ttccattttgatcttctggactctgatgggggagaaattcgggtaacctgctttaacgcg
gtggctgaccaattctaccaccaagttgaagcaggtaaaatatatttggtttccagagga
agtttaaaaccagctcagaagaactttaaccaccttcataatgatcttgaaatttttcta
gacatgacgtcaatggtacagttgtgctatgaggatgatgcttcaattcctcggcagcaa
tttcatttccgtcctattaatgatgttgaaggcatggagaataacagtgttgttgattta
attggtgtggtctcatatattagtccgactgcttcgttaatgaggaaaaatggtactgaa
actcagaagagaaccctccatttgagagacatgtctggccggagtgttgaattgacgttg
tggggaaatttctgcaatgatgatgggctaagactgcaacatatgtgtgattctggagtc
tttccaatccttgctgtaaaagctggtagggttagtgattttaacgggaaggttgtgggg
actatctctacaactcagctatttatagaacctgattttcccgaggctcacaggctaaag
gaatggtttgagaaggaagggaagaacacccagtcagtctctatttcgagggactcattg
agtgtgggaagggcagatatcagaaagactgtatctcaaattaaagacgagggcctgggg
actaaggagaagccagattggataacagtcagtgcaaccattgtttacataaaatgtgac
aatttttgctatacagcttgtcccatcatgattggagatagaccatgcaacaaaaaagtt
atgaataatggggatgggaggtggcattgtgataggtgtgatcaatcagtagttgaatgc
gactataggtacatactccagttccagatacaagatcatactggcttaacatgggtaact
gcatttcaagagtgtgccgaggaaatcatgggcatgtctgcaaaagatttgtattcatta
aaatatgttgatcaaaatgatgagaaatttggagaagttgttcgtaatgctacctttacc
aaatatttgttcaagttgaaagtaaaggaggaaacgttcagtgatgaacaacgtgtaaag
tcaacagtggtgaaggcagaaaggtataactattcgtctgaaactaggttcattttagat
ttgatggataagcttaaatctggggattcaacttcttttgccctgaaggcagaaaatata
attcccaaaccagaaatgacatacactggaacagggactattggaagccgacaaactgca
ccagtagttgcaaactatgtggggaataatagtaatgctggtgcggcatctggattattg
gcgaatcaaatgggtcaatacggaaatcaatacagtggttcaaggcttcctgctgctgga
acttctgctgcacggcagtcctgtagcagttgcggggctgttggtcatagcactatgaat
tgtcctagtatcatgagtgggccagggcagtctagtggaggaggttatgccaatagtttt
tcttctggagcaggcattgccacttctagtgaatgctataaatgccacaagactggacat
tgggcaagagattgccctagtctgaatgctgctcctccagcttatggaagcagcggcatt
ggcatttctgcagccggatataggggtgctccaagacaacaggttggtggcttttga
DBGET
integrated database retrieval system
