KEGG   Citrus sinensis (Valencia orange): 102626798
Entry
102626798         CDS       T02983                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
  KO
K07466  replication factor A1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03030  DNA replication
cit03420  Nucleotide excision repair
cit03430  Mismatch repair
cit03440  Homologous recombination
cit03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102626798
   03420 Nucleotide excision repair
    102626798
   03430 Mismatch repair
    102626798
   03440 Homologous recombination
    102626798
   03460 Fanconi anemia pathway
    102626798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cit03000]
    102626798
   03032 DNA replication proteins [BR:cit03032]
    102626798
   03400 DNA repair and recombination proteins [BR:cit03400]
    102626798
Transcription factors [BR:cit03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    102626798
DNA replication proteins [BR:cit03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    102626798
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     102626798
   MMR (mismatch excision repair)
     102626798
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     102626798
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223
Other DBs
NCBI-GeneID: 102626798
NCBI-ProteinID: XP_006477677
LinkDB
Position
3:join(8211904..8212031,8212120..8212266,8212359..8212565,8212656..8212833,8212910..8213180,8213261..8213363,8213445..8213569,8213675..8213753,8213837..8213981,8214252..8214412,8214512..8214632,8214718..8214924)
AA seq 623 aa
MDKTVSPDAISTILSNPSPDSSSDIPEIVVQVLDLKLTGNRYMFNASDGKKRLKAILPSN
LSSEVISGNIQNKGLIRLLDYALNEIPTKSEKYLIVTKCEVVSPALEMEIKIEVKSDESG
IIFKPKQEDEVKKDGPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSL
NPYQGNWTIKVRVTSKGNMRTYKNVRGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRF
QLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEAVNETAFIPQTKFNFVPIDEL
GRYVNGTELVDIIGVVQNVSPTMSIRRKSNNEMVPKRDITVADETKRTVTVSLWNELATN
VGQELLDNADKSPIVAIKSLKVGDFQGISLSTLGRSTVLVNPDLPEAKKLKSWYESEGKG
TSMASIGSGLGSLAKSGARSMYSDRVSLTHITSNPSLGDEKPVFFSIKAYISLIKPDQAM
WYRACKTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAER
IIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAP
VDFAAESKFLLEEISKKVSHQNA
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggacaagacagtgagtccggatgcaatttcaacgattttatcaaacccatctcctgac
tcgtcctctgatattccagagatcgttgttcaagttttagatctcaagctcaccggcaat
cgatacatgtttaatgcgagtgatgggaagaagagattaaaagcaattttgccttcaaat
ttatcatcggaggttatttctggaaacattcaaaacaagggtcttattcggcttcttgat
tatgcgctcaatgaaatcccaactaaatctgagaaatacctgattgtgacgaaatgtgag
gtggtgtctcctgcacttgaaatggagatcaagattgaggtgaagagtgatgaatctggc
ataatatttaaaccaaaacaagaagatgaggtaaaaaaagatgggcctggcattgttttg
aaacctaagcaagagatggttgccaaatctgctgctcaaatattacgcgatcagaatgga
aatatggcccctgctgcccgcttggctatgacaagaagggttcatcctcttgtttctttg
aatccttaccaaggtaattggaccatcaaggttcgtgttacaagcaaaggaaacatgcgt
acttataagaatgtgagaggtgaaggatgcgtcttcaatgtggagttaacagatgaagat
ggtacacaaatacaagcaacaatgttcaatgaagctgcaaggaaattctatgacaggttc
caattagggaaggtgtattacatatctaggggaactctgagggttgccaataagcagttt
aagactgtacaaaatgattatgaaatgaacttgaatgagaattctgaggtggaagaagct
gttaatgaaacagcattcattcctcaaacaaaatttaactttgtgcctattgatgagttg
gggcgttatgtcaatgggactgaacttgttgatattattggagtcgttcaaaatgtttct
ccaacaatgagcattcgaaggaagagtaacaatgaaatggtaccaaagcgtgatatcact
gttgcagatgagacgaagaggacagttactgtttctttgtggaatgagctggcaactaat
gttggccaggaattgcttgacaatgctgataaatctcccatagttgcaattaaatccctt
aaagtaggagattttcaaggcatctctttgtcaactctaggcagaagcacagtattagtc
aatccagatttgccagaagcaaagaagttgaagtcctggtatgaatctgaaggtaaagga
acttcaatggcttctattgggtctggtttgggttctctagctaagagtggagccaggtct
atgtactcagatcgagtatcccttacccacataacaagtaacccatccttgggtgatgaa
aagccagtgttttttagcatcaaagcatacataagcttaatcaagcctgatcaagcaatg
tggtaccgtgcttgcaaaacttgcaacaagaaagtgacagatgccctgggatctgggtat
tggtgtgaagggtgccaaaaaaatgatgaagaatgtagtttaagatacataatggttgca
agggtctgtgatggaagtggcgaagcttggatttctatattcaatgaggaagcagaaagg
atcattggatgctctgctgatgagcttaatgaattgaagtcacagttaggagatgataat
tcatatcaaatgaaattgaaagaagttacttgggttcctcatctcctccgagttagtgtt
gctcaacaagagtacaacaatgagaagagacaaagggtaaccgtcagggctgttgctcca
gttgactttgctgctgaatccaaatttttgctggaagagatatcgaagaaagtttctcat
cagaatgcctaa

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