Citrus sinensis (Valencia orange): 102627223
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Entry
102627223 CDS
T02983
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X2
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102627223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102627223
03036 Chromosome and associated proteins [BR:
cit03036
]
102627223
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102627223
Coactivators
SAGA/TFTC/STAGA complex
102627223
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
102627223
STAGA complex
102627223
TFTC complex
102627223
SAGA complex
102627223
SLIK complex
102627223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
CEP76_N
DUF4305
Motif
Other DBs
NCBI-GeneID:
102627223
NCBI-ProteinID:
XP_006469568
UniProt:
A0A067EWU3
LinkDB
All DBs
Position
2:join(20118073..20118198,20118425..20118511,20118596..20118697,20118786..20118894,20119401..20119501,20119591..20119728,20119822..20119917,20120741..20120865,20121110..20121242,20122031..20122156,20122279..20122387,20122496..20122872)
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AA seq
542 aa
AA seq
DB search
MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD
VDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSI
VCHWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDK
ITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVW
NLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY
NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML
LEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNGIVATLSNKR
KTSMDLEEQPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHPSPSSVQIPP
DSGSESRSKRDKGDSQAQKLSAILPQVWKDDLNSGKLLVSLFELFGEGILSFIPAPEMSL
FL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgtaccaaaggaaacagtagaggttatagcgcaaagcattggtattagtaat
ttttctaccgatgcagcgcttgcccttgctcctgacgtcgaatatcgtatacgcgaaatc
atgcaggaggcaattaaatgcatgcggcattcaaggagaaccacattgacaactgatgat
gttgatgaagctcttaaattaagaaacgtggagccggtgtatggttttgcctcagggggt
cctttgcggttcagaagagctattgggtatagggatttgttttaccttgatgacaaggat
gtggaatttaaagatgtgattgaagctcctttacctcgagcaccacttgatacatcaatt
gtctgtcactggcttgctattgaaggagtacaacctgtaatcccagaaaacgctccggtg
caagcaattgctgctccttctaatggcacaaacaatgaacagaaagatgggcttcctgtt
gagattaaattaccagtaaagcatatattgtctagggaacttcagctgtacttcgataaa
atcactgagcttgctgtgagtaggtccgattcagtccttttcaaacaagcgttagtgagc
ttggccacagactcaggactccatccattggttccttatttcacatactttgtagctgat
gaggtttctcgtggtctgaataattattcccttttgtttgctttgatgcgtgttgtttgg
aatcttctccagaatcctcacatacaaatagaaccttatcttcaccaattgatgccatct
gtggttacctgccttgtagccaaaaggttggggaatagacttgcagataaccactgggaa
cttagagactttactgcaaaacttgttgctgcaatatgtaaacgatatgggcatgtttat
aacactcttcagacacgtctaaccaaaactcttcttaacgcacttttggacccaaaacga
gcattgactcagcattatggggcagtccaagggttagcagcgctggggccgaatgtggtt
cgcctcctcctactgccaaatcttggtccttatctaagtcttcttgaaccggagatgctt
cttgagaagcaaaagaatgaggtgaagaggcatgaggcttggcgagtttatggggccctg
ctgcaagcagctggtcaatgcatatatgatcgactcaagatattccctcctttgtcatct
ctgcctgcacgttctgtctggaagaccaatggaatagttgctactttgtcaaataagcgg
aagacaagcatggatttagaagagcagccacccctcaagaaaattgcaaccgatggaccg
gtcgatgctgtgtcaaccagctccatgcccactcccatggaagaggatgcaacagctgca
actcctttggataattctgatgcggatcacccctcaccatcttctgtgcagattcctcct
gatagtgggtcagagagcagaagtaaaagagacaagggtgatagtcaagctcagaagttg
tcagcaatccttcctcaagtttggaaggatgacttaaattctggtaagcttctggtttca
ctgtttgagttgtttggtgaaggcattctctccttcattccagctcctgaaatgtctttg
ttcttgtga
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integrated database retrieval system
