Citrus sinensis (Valencia orange): 102627664
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Entry
102627664 CDS
T02983
Name
(RefSeq) uncharacterized protein LOC102627664 isoform X1
KO
K07573
exosome complex component CSL4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102627664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102627664
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102627664
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
102627664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
102627664
NCBI-ProteinID:
XP_006478973
LinkDB
All DBs
Position
3:complement(join(39477078..39477169,39479492..39479573,39480100..39480184,39480578..39480666,39481136..39481210,39482264..39482437))
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AA seq
198 aa
AA seq
DB search
MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP
TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRAT
EIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAESTAGGTMVPISWTEM
QCPLTGQTEQRKVAKVRS
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaaaagaagaagagatggtattggtaacaccaggagaggtgttggggaaggca
acagaagtgaaagcagggaagggagcttacgtggccaaacacaacggtctcgtctacgct
tctctcactggtctcctccgcactctatcccctcctcccgattcccccgaccagagacca
actgtggaagtaactggtcacaaggcccatggccctgttccagagcctggttctgttgtc
attgcccgagttacgaaagtgatgactaggatggcttcagctgatattatgtgtgttggt
gccaagtctgtgagagagaaattttcgggcataatcaggcagcaagatgttagagcaact
gagattgacaaagtggatatgcacttgtcatttcggcctggggacattgttagagcttca
gtgctgtcccttggagatgcacgggcatattttctttccactgcaaaaaatgatctgggt
gttgtgtcagcggagagtacagctggtggaaccatggttccaataagttggaccgagatg
caatgcccattaaccggccaaaccgagcaaagaaaggttgccaaggttaggagttga
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