KEGG   Citrus sinensis (Valencia orange): 102627728
Entry
102627728         CDS       T02983                                 
Name
(RefSeq) DNA mismatch repair protein MSH6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102627728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102627728
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     102627728
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor
Other DBs
NCBI-GeneID: 102627728
NCBI-ProteinID: XP_006492326
LinkDB
Position
3:complement(join(45920485..45920738,45921102..45921231,45921495..45921594,45921754..45921833,45922290..45922427,45922515..45922801,45923281..45923443,45923989..45924090,45924197..45924399,45924468..45924646,45924762..45924853,45925216..45925345,45925435..45925973,45926091..45926285,45926628..45926711,45926789..45926857,45927074..45927148,45927255..45927308,45927396..45927498,45927768..45927864,45928453..45929245))
AA seq 1288 aa
MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT
PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDKAW
YEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDSFKKVVVEDD
EEMENVEDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLVDEQENKVLRGRKRKSSGVKK
SKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGDVSERFSAREADKFHFLGPDLR
DAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMD
AHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEK
GSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD
VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLV
PLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPDILSELISTGDS
GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF
ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA
LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQ
ACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDM
DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYEL
RSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAE
LDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDIT
IGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAK
DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ
CRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNV
ARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLS
CQKSSEGDGVTCLTELQRQAGLFFAQQN
NT seq 3867 nt   +upstreamnt  +downstreamnt
atggctccgggtaagcgccaaaacaatggcagatccccactggtcaatccacagcgccaa
attacttcgtttttttctaaatctaattcgccgtctccttctcccactatctccaaatta
aaccctaataagtcgaactcgaacccaaaccctaaccctaactctaattctaatcggacc
ccgagtccaagccctagtccgaccaccccgtcccctctccaatccaaccctaaaaaatct
cgcctcgtcatcggccaaactccctctcctcctccttcaacgcccgctgcggccaaatcc
tacggtgaagatgttttgcgcaagaggattagggtttactggcccttggataaggcctgg
tacgagggttgtgtgaaatcttttgataaggaatgtaataagcatttggttcagtacgac
gatggcgaagatgaattgttggatttgggaaaggaaaagattgagtgggtccaagagagt
gtaagcttgttgaaacgacttcgccgtgattctttcaagaaagtggtggttgaagatgac
gaggaaatggaaaatgtagaggatgagataagtgatgatagaagtgattctagtgatgat
gattggaacaagaatgtaggaaaggaggatgtaagtgaggatgaggaagtggatcttgtt
gatgagcaggagaacaaggttttgagaggaaggaaaaggaaatcaagtggagtgaagaag
agcaagagtgatggaaatgcagttaatgctgactttaagtctcctatcattaagcctgtg
aagatttttgggagtgataagttatctaatggttttgataatccagtaatgggtgatgtc
tcagagagatttagtgcacgtgaagcggacaagttccacttccttggaccagacctcagg
gatgcaaaaagaagacgccctggagatgtatattatgatccaaggactctctacttgcca
cctgatttcttaagaaatttatcagaaggccagaaacaatggtgggagttcaagtcaaag
catatggacaaggttatcttttttaagatgggcaaattttatgaactttttgaaatggat
gcgcatgtaggagcaaaagaacttgacttgcagtatatgaagggagaacaacctcattgt
ggatttccagagaggaacttctcaatgaatgtggagaaattggcaagaaagggctatcgg
gttcttgtcgttgagcaaactgaaacacctgaacagttggagcttcgtcgaaaagagaaa
ggttctaaagataaggtggtgaaacgtgaaatatgtgcagtagttacaaaaggaacacta
actgagggagaattgctgtcagcaaatccagatgcttcttacctgatggcactgactgaa
agcaaccagagccccgcaagccaaagcactgaccgttgttttggtatctgtgtggttgat
gttgctaccagcaggataattcttggacaggttatggatgatttagactgcagtgtgttg
tgttgcctgttatctgagctaaggcctgtagaaattataaaacctgcaaatatgctcagt
cctgaaactgaaagagcaatcctgagacatacaagaaatccgttggtgaatgatttggtc
cctctctcagaattttgggatgctgaaacaactgttctggagatcaaaaatatctataat
aggataactgctgaatctttaaacaaagcagattccaatgttgctaattctcaggcagaa
ggagatgggttgacctgccttcccgacattttgtcagagctaataagcactggtgacagt
ggaagtcaagtgctttcagctcttggaggcactctgttttatctaaagaagtcttttcta
gatgagacattgcttagatttgcaaagtttgaattacttccatgctctggctttggggat
atggccaaaaaaccatacatggttcttgatgctcctgccttggagaaccttgaggttttt
gagaacagtagaagtggagactcttcaggaacgctgtacgcacagttgaatcattgtgtg
acagcattcgggaagaggttgctgaggacatggctagccaggcctttatataattcagga
ttaataagggaacgacaggatgctgttgctggtttacggggggtaaatcaaccttttgca
ctggaatttcgaaaagccttgtccaggctaccagatatggagcgcttacttgctcgcctc
tttgccagtagtgaagctaatggaagaaattcaaataaagtagttttgtacgaggatgca
gcaaagaagcagcttcaagagtttatatcagctttacatggttgcgagttaatggatcaa
gcatgttcatcgctgggtgccattttggaaaatactgagtctagacagctacatcatata
ttaactcctggcaaaggtcttcctgctatcgtttcaatactgaaacatttcaaggatgcc
tttgattgggtggaagccaataattctggtcgtataatacctcatggtggcgttgatatg
gactatgactctgcctgtaaaaaagttaaggagatagaagcgagtttaactaaacacctc
aaggagcaaaggaagttacttggagacacatcaatcacttatgtcaccattggcaaagat
ctttacttgctagaggtaccagaaagtttgcgtgggagtgttccccgtgattatgagtta
cgatcatccaaaaagggtttcttcaggtactggactccaaacattaagaaattattggga
gagctctcacaagctgagtctgaaaaggagtcagcattgaagagcattttgcagaggttg
attggacagttttgtgaacaccataataagtggagacagatggttgctgcaacagcagaa
ctggatgctctaatcagtttggctattgcaagtgacttttatgaagggccaacatgccgt
cctgttatcttagactcatgttcaaatgaagagccatacatttctgctaaaagtttagga
catcctgttcttagaagtgattccttaggcaagggtgaattcgttcccaatgatattacc
ataggtggtcatggcaatgccagtttcatactccttactggtcctaacatgggaggaaaa
tcaacccttcttcgccaagtgtgcttagctgtaatcttggctcaggtaggagcagatgtc
ccggcagaaatatttgaaatttcacctgttgaccgaatctttgtccgtatgggtgctaaa
gatcatattatggcaggccagagtacctttttgactgagctttcagaaactgcattaatg
ctgtcatcagcaactcgtaattcattggtggtgctagatgaacttggacgtgggacatcg
acttcagatggacaagccattgcggagtcagttcttgagcactttgttcataaagtgcaa
tgccgtggattgttttcaactcactatcaccgcttagctgtagactataagaaagacccc
agggtctcgctctgtcatatggcttgccaagtcggaaatggagttggaggtgtggaagaa
gttacatttctttataggttgagccccggtgcatgtcccaaaagctatggcgtcaatgtt
gcacgactagctggaattcctgacaaagtacttcaaaaagctgttgcaaagtccacagag
tttgaggctatatatggtaagcacaagaaggaatctgaagaaaatttgcccgcagaccat
tgtgttgaccatatggtggtcttgatccaaagtttgctcaatttcactgcaaacttaagt
tgtcagaagtcttctgagggtgatggtgttacctgcctcacagaactgcagcgtcaagca
ggactattttttgcacagcaaaactga

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