KEGG   Citrus sinensis (Valencia orange): 102627826
Entry
102627826         CDS       T02983                                 
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X4
  KO
K11267  sister chromatid cohesion protein PDS5
Organism
cit  Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:cit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cit03036]
    102627826
   03400 DNA repair and recombination proteins [BR:cit03400]
    102627826
Chromosome and associated proteins [BR:cit03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Other sister chromatid cohesion factors
    102627826
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Shu complex and associated proteins
     102627826
SSDB
Motif
Pfam: PDS5 HEAT_GCN1 MMS22L_C TPR_DNAAF5 HEAT_GCN1_C HEAT_EF3_N
Other DBs
NCBI-GeneID: 102627826
NCBI-ProteinID: XP_006472772
LinkDB
Position
5:join(32940598..32940699,32941295..32941528,32941633..32941814,32942591..32942720,32943019..32943240,32943408..32943624,32943735..32943880,32943961..32944118,32944312..32944458,32944529..32944577,32945031..32945219,32946261..32946437,32947259..32947398,32948153..32948279,32949028..32949168,32949318..32949386,32949492..32949628,32955775..32955868,32961890..32962024,32962125..32962321,32962435..32962582,32962666..32962803,32962878..32962964,32963085..32963552,32964120..32964206,32964739..32964785,32965555..32965664,32966450..32966529,32966793..32966825)
AA seq 1396 aa
MAESPLQLVSEMGDKLAKLSFTRFNKGLFLDSLKQVENALSKIEQPLSPETSKKAEALKK
LEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIIS
LFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHL
SSLINHMLSIMTHIINEETSLPLLEVVLSNLVKQEKDSPYAAPQLAVSVIRNCAEKLEPF
VCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKA
VNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESRE
ILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALL
KLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVL
EVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEIRYYLSVRKKEKGSCHEETHEQM
KNSFVKMSASFPDPSKAEGCFQRLNEMKDNTIFNSLEELLDNMTIKNAEILRDKFLKLIG
NKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSL
LRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAV
SAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRY
IYENLIKGEPSDVLASFDETSGCDTSCKLRSYGLKTLVKSFLPHRGSHLKRKINELLDSL
SEMLQTADVPNGHISRFAAAKSVLQLSRRWDLHISPDIFCSTILMSKDSSAFVRRKFLDK
THKWLKAHAIPIKYACAFALATSDCQKDLRDDSFKYMAEFIKDYSIEARARRNSAVQGVS
NTDYPAYVVVFLIHILAHDRGFPPEDCKDEGIIAQFFCPLFSLLQTLLNPSIVDGDMGLV
NDAVLYLLTIFCAIKKAEDAVDAHRTPKLHMLADIGISIVKELNHNVIASRAVGRILLPL
SLYQVSLARKNGEANSECLSQSYFEQSFVETVVHVVKSHISLPGKTLPKRNQKRQEGSEH
SVATYPTLNLVACKQFDLTSSGMIKPKNKEVKQENSTRYKTKGAHLATALVDKPIQCSTV
ECKNGASKGSATTPEKELHSSCDSVAMELSFTDSQVSCQNMERTTISLKENVRPVSSIVT
ADPSINNRAKFKEPCGVNIANGSGDFELLCLDSRSCETICGDSLSEREVLLEEDLNTLHS
RHGNLHKTVDTFKDNSAQQLIALSKQEDGLFCGRTVLLTGSAKGKRGRKVWEDTSASEVI
NINDDAVTRRSQRRKV
NT seq 4191 nt   +upstreamnt  +downstreamnt
atggccgagtcaccgctgcaactcgtctccgaaatgggcgacaaactcgccaaactctct
ttcactcgtttcaataaaggcctgttcctcgattccctcaaacaagtcgaaaatgctttg
tcaaaaattgaacagcctctgtcacctgaaacttccaaaaaggcagaagctctcaagaag
ttagaagctgcaacgaagcctctgaggaaatctataattaagcatggactgcttcatcaa
aatgataaggatattaggctctctgtggctacttgtgtcagtgaactctttcggatcctg
gctcctgaaccgccctttgaagacaactatcttaggggagtttttgaacttattatcagt
ttgtttaaagagcttggcaataccgggtgccctttcttttccaagagggttaaaatactg
gagatcgttgctcgctctaaatgttttgtgataatgctggacattgactgcaatgattta
gttctccaaatgtttaataattttttctctgttgtgaggctctgcagtgaacctcattta
tcaagtttgattaatcacatgttgtctataatgactcatattataaatgaggaaacttct
ctcccacttttggaagtagttttgtcgaatctggttaagcaagaaaaggattcaccatat
gctgctcctcagcttgctgtttctgtcatccgtaattgtgcagaaaagcttgagcccttt
gtttgtgggttcttaacatcatgtttcttggatagagatgctgtagagggtgatctcaaa
gaattttaccatgaaattatttttaaaatttttcaatgttctcctcagatgcttcttgct
gtcatcccaaacttgatccaagagttactggttgatcaggttgatgtccgaataaaagct
gttaacttaattggaaaaatctgtgcacaaccagataactgtcttgcagatagatatcct
gaactttttgtagagtttctgaaaaggttctctgacaaatctgctgaagttagattaaat
gctcttcgttgtgctaaagcatgctacttaggaggtccatttaggaaagaatctcgtgaa
attctcgctgcccttgaaagtcgactgttagactttgatgatagagtgagaacagaagca
gtcattgttgcctgtgatcttgccaggtctcacctgaaatttgttccagagaaactaata
tctgaagctactgaaagacttcgggataagaagatatctattagaaagaaggccttgtta
aagttgttggaagtatatcgtgaatattgtaaaaagtgttgcgaaggccagatgacagta
tgcgatcattttgagcagattccttgtaaaatcttgatgctttgctatgataaagattat
aaggagttcaggccccaaaacattgagcgaattcttgtggaggatttgtttcctgttctt
gaagttgaggagagtacaagacattgggtgcatttgttttctcttttcacccctcttcat
ttgaaggcactgaactgtgttttatctcagaaaaaaaggtttcgttcagaaatacgatat
tatttatccgtacgaaagaaagagaaggggagttgtcatgaagaaacacatgaacaaatg
aaaaattcatttgtgaaaatgtcagcttcatttcctgatccttctaaggcagaagggtgc
tttcagagattgaacgagatgaaagataatacaattttcaattcgctggaggaattattg
gacaacatgacaataaaaaatgctgagattttgagagataaatttctgaaattgatagga
aataagcatccagaatttgaatttctgcagttgctcacctcaaaatgcctgtatatattt
gattcagagcttgtctgctgtattgtcaatgggctttccagcaatagatatgcagataag
catcttgaggattcttctattaaccttcttctggccattatcagcatttttccttcatta
ctgagaggttcagaagtgcaatttcaaaagttgttagagaggaatggcctgattaatgat
aagctgattgaagttttggcaaaagctggtcctcatatttcaatcaaatatagtgatatt
taccctttgttggagaggctgtgtcttgaaggaactcgagctcagtcgaaacacgctgtt
tctgctatagcttcattaagtggtgcttctgagcaatttgttttcatggaattatgcaag
ggacttgtggattctctacattgtgggaggaacatcccaactgtcttgcaatctttgggc
tgcattgcacagtattctgtttcggcttttgaatctcaaagtgaagatatcacccgatac
atttatgagaatcttataaaaggggaaccatcagatgtattagcttcatttgatgagact
tctgggtgcgatacttcttgtaaattgaggagttatggtctgaaaacacttgtcaagagt
tttttgccacatcgaggatctcatctcaaacgtaaaattaatgaattgctcgattctttg
tcagagatgctgcaaacggctgatgttcccaatggtcacatttcgcgattcgctgctgca
aaatctgttctccagctttccagaagatgggacttgcatatttccccggatatcttttgt
tctacaattttgatgtccaaggactcctctgcatttgtaaggagaaagttccttgataaa
acacacaaatggttgaaagcacatgctatacctattaaatatgcatgtgcctttgcattg
gccacctcagattgtcagaaggatctgcgagatgattctttcaaatatatggccgaattt
atcaaggattacagcatagaagctcgagctcgccgaaattctgcagtgcaaggggtatca
aatactgattatccagcatatgtagtggtgttcttgatccatattcttgcacatgataga
ggcttcccacctgaagactgcaaagatgaagggatcattgctcagtttttttgtccactt
ttttctctcttgcagacattactcaatcctagcattgttgatggtgacatgggtcttgtt
aatgatgctgtgttgtatttgcttacaattttttgtgctattaaaaaagctgaggatgct
gttgatgctcacagaactccaaaattgcacatgctagcagacattggaatctccattgta
aaagaattgaatcataatgtcatcgcctcacgagctgttggaaggattcttttgccatta
tccttatatcaagttagtcttgccaggaagaatggagaggccaattcagaatgtctttct
cagagctattttgaacaaagttttgttgagacagttgttcatgttgtcaaatctcatatt
tctctgcctggtaagactcttccaaaacgtaatcaaaaacgtcaagagggtagcgaacac
tctgttgcaacataccccacattaaacttggtagcatgcaaacagtttgatttgacatcg
agtgggatgataaagcccaaaaataaagaggtcaagcaagaaaacagtacgagatataaa
acaaagggggcccatttagcaactgcacttgtagataaacccattcagtgttctactgtt
gagtgcaaaaatggtgcatctaaaggttcggccacgactccggagaaggaattacattct
tcctgtgattctgtagctatggaattatcttttacagattcacaagtttcatgccagaac
atggagagaactactatttctttgaaagaaaatgtcaggccagtcagtagtattgttacc
gctgacccttcaataaacaacagggccaagttcaaggaaccctgcggtgtgaacattgct
aatgggagtggagatttcgagttattatgcttggatagcaggagctgtgagactatttgt
ggtgactccttgtctgaaagggaggttttgttggaagaggacctaaataccttacattca
cggcatggtaatctacacaaaactgttgatacattcaaagacaattctgcccagcagcta
atagccttatcaaaacaggaggatgggttgttttgtggaagaacagttcttttgactgga
tcagcaaaggggaaacgggggaggaaagtttgggaagacacatcagcctcggaagtcatc
aatataaatgatgatgctgttaccagaagatcgcagaggcgcaaagtttag

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