KEGG   Citrus sinensis (Valencia orange): 102628065
Entry
102628065         CDS       T02983                                 
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X2
  KO
K06672  cohesin loading factor subunit SCC2
Organism
cit  Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:cit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cit03036]
    102628065
Chromosome and associated proteins [BR:cit03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Adherin complex
    102628065
SSDB
Motif
Pfam: Nipped-B_C Cohesin_HEAT PDS5 PHD PHD_2 COP9_hel_rpt zf-PHD-like zf-RING_16
Other DBs
NCBI-GeneID: 102628065
NCBI-ProteinID: XP_006482735
LinkDB
Position
6:complement(join(25953690..25953902,25953987..25954112,25954209..25954301,25954382..25954814,25954899..25955192,25955271..25955404,25955681..25955914,25955979..25956083,25956167..25956334,25956593..25956701,25957200..25957369,25957712..25957864,25957950..25958249,25958765..25958932,25959040..25959198,25959305..25959355,25959434..25959644,25959722..25960254,25960326..25960757,25960880..25961066,25961144..25961240,25961750..25961861,25961995..25962102,25962433..25962689,25962813..25962909,25962984..25963120,25963895..25964004,25964532..25964815))
AA seq 1824 aa
MSSFPSASTSGSGSGSGLGSTGQWGIGFSNTIHSEVAPCLPLPSLPVFCGATDPNLRLFD
EASAGVSYRSLNRTEILTQSSRIADLLRVTDVSYLNLRDEAKPDPYSDMEPLELHNQVLQ
YNAEAFEYVTPGHIKEQVSGGESFERKDREPSILGASGLQRDYIGAQNPHLDRILTNDVS
TSSSRKPKIKKKGGDNISSSAQPDPIEVQDATITNFCEMLEDFCGRAEIPTDDQNDTELL
SLPVADVRIVVNEIMSLRAKKLLHLVSVDILVRLLRVLDHQIHRAEGLSVDEREHLDSDR
VSMVFCALESIHAALAVMAHDHMPKQLYKEEIIERVLEFSRHQITDVMSAYDPSYRALHK
TSESAALEVDEDEEVDADLGSASKRRRTMKNVKVKRSAFNRVSGAVNSILQKLCTILGLL
KDLLLIERLSDSCILQLVKTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTYVIDEIL
LLLWKLPSTKRALRTYHLPDEEQRQIQMVTALLIQLVHSSANLPEALRKATSGSTILEVQ
IDSSYPTKCHEAATDTCCLFWTRVLQRFTSVKTQDASELKVMMENLVMDLLTTLNLPEYP
ASAPILEVLCVLLLQNAGPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFWMLQELV
REDSSDQSYPKDLCCVCLDGRVEKRMFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC
RNQLLVLQSYCKSHCKGDINKSHSRSESNPETSDTITKLEIVQQMLLNYLQDAVSADEMN
LFVRWFYVCLWYKDDPEAQQKSMYYLARLKSKEIVRESGTISLSLTRDTVKKITLALGQN
NSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDS
AISVREAALELVGRHIASHPDVGLQYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFT
EFTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQ
IVEMLRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERIL
QVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNRVVAK
FLESVIFIIDAVLPLVRKLPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGK
GLSTVEHLILVFFKYLDSHNPDSKQFQQVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSN
LNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQAL
QNLYEYLLDAENQMETDKGSSNEVEYTVEDGHSVPVAAGAGDTNICGGTIQLYWDKILGR
CLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKY
PAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKGKSDGSSLTQARLGVSQ
IYKLIRGNRNSRNKFMSSIVRKFDNPSCSDLVIPFLMYCTEVLALLPFSSPDEPLYLIYT
INRIIQVRAGALEANMKAMSTHLLQRDAQKTTYENGMVDQESAEPVFNHMTSMDLNGTIK
EEPSAQPIFYHMSSIDLNGTVQPEPNDQPLLHRIPPLEAKVHVMSSGEPRDIPKDDLQKV
QVDCISATALQLLLKLKRYLKIVYGLNDARCQAYSPSEPQKPGEPLTKQNIPFDISDTRV
ALPSTYEDLMQKYQEFKNALKEDTVDYAVYTANIKRKRPAPRKGVRYGRIIGGDDDEDYS
DEEWGGGARKLSNSGRKSYSSRRR
NT seq 5475 nt   +upstreamnt  +downstreamnt
atgagcagcttcccgagcgcttcgacttctggctctggctcgggctcgggcctaggctcg
accggccagtgggggatcggcttttcgaacacgatacactcggaagtagctccgtgcttg
ccgttgccttcgcttccagtgttctgcggcgctacggatccgaacctgcggttgttcgat
gaagctagcgctggtgtcagttataggtcgttgaatcgtactgagattctcactcagtcg
agtcgaattgctgatctacttcgtgtaaccgatgtttcgtacttgaatcttagagatgag
gcaaagccagatccctatagcgatatggagcctttagaacttcacaaccaagttctccaa
tataatgcggaagcttttgagtatgtcactcctggtcatattaaggagcaagtttctggc
ggtgaatcatttgaaaggaaagaccgtgagccaagtatacttggcgctagtggtttgcag
agagattatattggagctcagaatccccacctcgaccgtatccttacaaatgatgtatcc
acttcatcttcccgaaaacccaaaatcaagaagaaaggtggggataacatctcttcctca
gctcagcctgatcctattgaggttcaagatgctaccattacgaacttctgtgagatgttg
gaggatttttgtggcagagctgaaattcctactgatgatcagaatgacacagagttgttg
tctttacctgttgctgatgtcaggattgttgtgaatgaaataatgtcattacgtgcaaag
aaacttctacatttagtctcagtagatattctggtgagactattgcgggttctagatcat
caaatacatcgagcagaaggtttatcggttgatgaacgtgagcatctagattcagataga
gtttccatggtcttttgtgcccttgaatcgattcatgcagctctagctgtaatggctcat
gaccacatgccaaagcagctttataaggaagagatcattgaaagggttttggagttctcg
aggcatcaaataacagatgttatgtcagcttatgatccgtcatatcgtgctctgcataaa
actagtgaaagtgcagcacttgaggttgatgaagatgaagaggtggatgctgacttaggt
tcagctagcaagagacggcgcacaatgaagaatgtgaaagtgaagagatctgcatttaat
agggtttctggtgctgtgaattcgatacttcagaagctctgtacaattcttggtttactc
aaggatttgttgttaattgagagattatctgatagttgcattctgcagctggtgaagaca
agctttacgacatttttggtggataatgtccagctcttgcaattgaaggctatcggttta
ctaagcgcgatattctattcatacacccagcatcgcacttatgtgatagatgaaatactt
ctgcttctttggaagctgccatccacgaaaagagcattgagaacttatcacctacctgat
gaagaacagaggcagattcagatggtcactgctttgctaattcagttggttcatagtagc
gcaaacctccctgaagctttgaggaaagcaacaagtggtagtaccatattagaagtccag
attgattctagttacccaactaaatgccatgaagcagcaacagatacatgctgtttgttc
tggacccgcgttcttcagcgctttacaagtgtaaagactcaggatgcttctgagctgaaa
gttatgatggagaatcttgtcatggatttactgacaactttgaatttaccggaatatcca
gcatctgctcctattctggaggttctctgtgtcttacttctacagaatgctgggccaaaa
tctaaagacgtctcagcacgttcaatggccattgaccttcttggtacaattgctgccagg
ttgaagcaggaagctgtcctctgcggccgggagagattctggatgttacaagaactggtc
agagaggatagttctgatcagagttaccctaaagatctatgttgtgtttgcttagatgga
agagttgagaaaaggatgtttatgtgtcaaggttgtcaaagattgttccatgctgattgt
ttgggtgtaagggaacatgaagtgccaaatcgtggctggaattgtcagctttgtctctgc
aggaaccaacttcttgtactacaatcatactgcaagtcacattgcaagggtgacattaat
aagagccacagtcggtcagaaagcaatcccgaaacttctgatacaattacaaaacttgaa
attgttcaacagatgctcttgaattaccttcaagatgctgtttctgcggacgaaatgaat
ctctttgtgcgatggttttatgtgtgcctatggtacaaggatgatccggaagctcaacaa
aagtccatgtactaccttgctagactgaaatcaaaagaaatagtgcgtgaatctgggact
atttcattgtctttgactagagacacagttaaaaagatcactctagcactgggacaaaat
aattctttctctagagggtttgataagatccttcatctgcttctggttagtttaagggag
aactctcctataatcagggctaaggctttacgagcggttagtataatcgtcgaagttgat
cctgaggtgttgtgtgacaaacgtgtacagttggctgttgaaggaaggttttgtgactca
gcaatatctgtaagagaagcagcattggagctcgttggccggcatattgcttcacatcct
gatgttggtttgcagtattttgtgaaagtagcagagaggataaaagatacgggagtaagt
gtgcggaaaagggcaatcaaaatcatccgagatatgtgcacttcaaacactaacttcact
gaatttacaaccgcttgcatcgagatcatatctcgtgttaatgatgatgaatccagtata
caggatcttgtctgcaagaccttttatgagttctggtttgaggaaccttctggattgcag
actcaatattttggagatggtagttctgttccgttggaggtggctaagaagactgagcag
attgttgaaatgttaagggggttgccaaatcatcagcttctggtcactgtcattaagcgc
aacttagctcttgattttttccctcagtcagctaaagctgctgggatcaaccctatgtca
cttgcatcagtacgtcgacgttgtgaactaatgtgcaagtgcttattggaaaggatattg
caggtagaggagatgaataatgagggaatggagatgcgtacccttccctatgtgctggtc
ttgcatgcattttgtgtggtggatccaacactttgtgcacctgtttcagacccttcccag
tttgtcatcactctgcagccatatctcaagagtcaggttgataatcgagtggttgcaaaa
tttctagagagtgtaatttttataattgatgctgtgctgcccttggttcgaaagctacct
tcgagtgtcattgaagaactggaacaagacttgaagcacatgattgttcggcattctttt
ttgacagtggtccatgcttgcatcaagtgtctgtgctctgtgagtaaaatatcaggaaaa
gggttaagcacagttgagcatcttattttggttttcttcaagtatttggatagccacaat
cctgatagcaagcagtttcagcaagtggggcggtctcttttctgtcttggattgcttatc
cgttatgggagttctctgctgactacctcatatgagaaaaatattgatattgtcagcaat
ctcaatcttttcaaaaggtatcttcgtatggaggattttagtgtaaaggttagatctttg
caggccttaggctttgttttgattgctagaccagagcatatgttggaaaaggacattggc
aagatattagaggcaacattggctgactcttctcatatccgacttaagatgcaagctttg
caaaatctgtatgaatatcttcttgatgcggaaaatcaaatggaaacagataaaggcagt
agtaatgaggttgaatacactgtagaagatggccacagtgtacctgttgctgccggtgca
ggggatacaaacatatgtggaggtacaattcagttgtattgggataagattttgggaaga
tgcttggacgctaatgaggaagttcgccagactgcccttaagatagtggaagtagtgcta
cgtcaaggtcttgttcatcctattacttgtgttccatacctaatagcgcttgagacagat
cctcaggaagtgaactcaaagttggctcatcatttactgatgaatatgaatgaaaagtac
cctgctttctttgaaagccgcctgggagatggccttcagatgtcatttgtttttatacaa
tccatcggtggtggttcttctgaatgtcgaaaccagaaattccaatccaaggctgcagga
actatgaaggggaaatctgatggaagctctttaactcaagcaaggcttggggtttcacaa
atttataagcttattcgtgggaaccgaaattcgaggaacaaatttatgtcatccattgtc
cggaagtttgataacccaagctgtagtgatttagtgattccttttttgatgtactgtact
gaagtccttgccttacttccattttcctcacctgatgaacccctttatttgatttatacc
ataaatcgaattatacaagttagagctggagcactcgaggcaaatatgaaagcgatgagt
acccatttgttacaaagagatgctcagaagaccacctatgagaatggaatggttgatcag
gaatcagctgagcctgttttcaatcacatgacttcaatggatttaaatgggacaattaag
gaggagccttctgctcagcctattttctatcatatgtcatcaatcgacttgaatggaaca
gtgcaaccggaacccaatgatcaaccactcttacatcgaatccctccattggaggcaaag
gtgcatgtcatgagttcgggtgaaccacgtgacatccccaaagatgatcttcagaaagtt
caggttgactgtatttcagctactgcactgcaacttcttctgaagctgaagaggtaccta
aagattgtgtatggtttaaatgatgctcggtgccaggcatattctccaagtgaaccccaa
aaaccaggagaacctcttaccaagcagaacatcccctttgacatcagtgatacacgtgtt
gcgttgccatccacttatgaagacctcatgcagaaatatcaggaatttaagaatgcattg
aaggaagatacagtcgactatgcagtatacacagccaacatcaaaaggaagcgccctgca
ccgagaaagggggtgagatatggacgaattattggcggggatgatgatgaggactatagt
gatgaagaatggggaggtggagctcggaagctgagtaatagcggcaggaaaagttatagt
agtagaaggaggtag

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