KEGG   Citrus sinensis (Valencia orange): 102628100
Entry
102628100         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102628100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102628100
   03012 Translation factors [BR:cit03012]
    102628100
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102628100
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102628100
Translation factors [BR:cit03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    102628100
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 AAA_19 AAA_16 nSTAND3 ATPase T2SSE AAA_30 NACHT PhoH ABC_tran Dicer_dimer AAA_11
Other DBs
NCBI-GeneID: 102628100
NCBI-ProteinID: XP_006490711
LinkDB
Position
1:complement(join(15383676..15384149,15384297..15384407,15384539..15384691,15384856..15384915,15385182..15385490,15386516..15386664,15386756..15386825,15387256..15387459,15388650..15388844,15390067..15390339,15390451..15390624,15391316..15391446,15391521..15391680,15391791..15391979,15392687..15392782,15393928..15394155,15394394..15394481,15394566..15394720,15396875..15397249))
AA seq 1197 aa
MPFSFIFIRSGTTMTMALRPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHL
PFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQDESSDDSDREFGS
TQQQMCGSTLDNIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQY
AKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNV
GSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSY
KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM
AVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIV
DEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPV
RAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADF
REYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH
PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCG
KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPE
LLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLG
RNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSA
RDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVD
RNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVP
KIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKP
ELADTYLSLKREIEELTQQKLLNPKLGIEVQNELLLAVRLLVSEDRCEGRFVFGRQIPAP
SKKSAKVALPEMVSKGGMVSKGGGDNPKTDLQTVLARAGHGAPAYKTKQLKNNQFRSTVI
FNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDRHSSARDLDHVSMLLKRKNRSKKRT
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgcccttctcgttcattttcattcgaagtggcacaaccatgaccatggctcttagacct
acttctcttaacttctacagggcccccaaagctctactaaaaccctcgccattatcgctt
ctcgttgttaaaaatcaagctgtagcttttaggttgctgcatcattatcattatcatttg
ccttttcacttgagtaggcgaaggcacgcggtggtcacgtgctcgggggctgttactagg
actcgtcggcttgattggaaggccgtttcgtaccctcttttggagcagcagacgtctaat
tacggccggtatgcttaccaggacgagtccagcgatgactctgaccgtgaatttgggtca
acacagcagcaaatgtgtggttcaacccttgataatattgatgagtggagatggaagtta
accatgctgcttcgcaacaaggatgagcaagaagtggtgtcaagggcgaaaaaggaccga
cgtgacttcgaacaactttcagcattggcaaccagaatgggtttacatagtcgtcaatat
gcaaaagtagtcgtttttagtaaagcccctctaccgaattacagatctgatctagacgaa
aagcgtccgcaaagagaggtgatcttaccatttggattattaagagaagtagatgctcat
ctcaaagcttatctttcgcaaaagtatatcaatgcctccatgtcgagtttaagcaatgtt
ggcagtactactaatgatgaaggactctatgagcagcaggaacagctggtgcagaatagt
gttgtgagggaaagaattctccggcagagaagtttgcagatgcatgaaaagcagcaagct
tggcaggaatctcctgaagggcagaagatgcttgaatttcgaagaagtctaccttcatac
aaagagagggatgcattattaaaagccatttcagagaatcaggtggtggttgtctcgggt
gaaactggttgcggtaaaaccacacagcttccacagtatatattagaatcggagactgaa
gctgctcgtggagcagcttgcagtatcatatgtacacagcctagaagaatttctgctatg
gctgtttctgaaagagttgctgcagaacgaggggagaaactgggagaatctgttggttat
aaagttcggctagagggaatgaaaggaagggacacacgtcttatgttttgcaccactggc
atattattgaggagattacttgttgacagaagtttgagaggtgtaactcatgttattgtt
gatgagattcatgaacgtgggatgaatgaagattttcttcttattgtcctgaaagagctc
cttccacgccgaccggaattgaggttgattctcatgagtgcaaccttaaatgcagaacta
ttctcttcatattttggtggtgctccgatgctccatattccgggttttacataccctgtt
cgagcatattttctggaaaatattctggagatgactagatatcgtttgaacacatataat
caaattgatgattatggtcaagagaagtcatggaaaatgcaaaaacaagctctggctctg
agaaagagaaagagctccattgcttctgctgttgaggatgcacttgaagctgctgatttt
agggaatatagtgtacagactcagcagtctttatcctgttggaatccggactcaattgga
tttaacctcattgagcacgtgctttgccacatagtgaagaaagagcgacctggtgctgtt
ttggtttttatgaccggttgggatgacataaactctttgaaagatcagctccaagctcat
cctctcttgggtgatccaagcagagtgttgttacttgcatgccatggttctatggcaagc
tccgaacagaggttgatatttgataagccagaagatggagtgaggaaaattgttctagct
actaacatggctgagactagtataaccatcaatgatgtggtttttgttattgattgtggg
aaggcaaaagagacatcttatgatgctctaaataacactccttgtttgcttccttcctgg
atctcaaaggccgccgcccgacaaagaagaggaagagctggccgtgtacagcctggcgag
tgttaccatctctatcccagatatgtctatgatgcttttgctgattatcagttgccagaa
cttttaaggactccactgcagtctctatgtttgcaaatcaaaagtttacaacttggaagt
atctccgaattcctatctagagccctgcaaccacctgagccattatcggtcaaaaatgct
attgaatatctgcagatcattggggctttagatgagaatgagaatctgacagtgctagga
cgcaatttgtcaatgcttccagttgagcctaaacttggaaaaatgctcatattaggggct
attttcaactgtctagatccagtaatgaccgttgttgctggtcttagtgtcagagaccca
ttcttgatgccatttgacaagaaggaccttgcagagtcagcgaaagctcaattctctgcc
cgtgactacagcgaccatcttgcacttgtacgtgcttatgatggttggaaagatgctgaa
agacatcaatctggttatgagtattgttggaaaaattttctttctgcacaaactctgaaa
gccattgattctttacgaaaacagttcctttttttgctcaaggatgctggtctggttgat
cgcaatacagaaaactgcaataaatggagccatgatgagcatcttatccgagcagtcatc
tgtgccggcttgtttcctggactatgctctgttgtgaataaagaaaagtccatagcattg
aaaacaatggaggatggtcaggtgcttctatactcaaattctgtgaatgctggagtacct
aaaattccatacccatggctagttttcaatgaaaagatcaaagtgaattcagtttttctc
cgggattcaactggtgtatctgattctgtgcttctcttgtttggaggtaacatttctaga
ggtggactggatggacacctcaaaatgttgggaggatacttggaatttttcatgaaaccc
gaattagctgatacctatttaagcttaaagagagagattgaggaacttactcagcaaaaa
cttcttaatcctaagttgggtattgaagtccagaatgaactcctactagcggtcagatta
ttggtgtcagaggatcgatgtgagggcagatttgtctttggccgccagataccagcaccc
tcaaagaagtcggcaaaagtggcactcccagaaatggtctcaaaaggtggaatggtctca
aaaggtgggggtgataatccaaaaactgatctgcaaacagtgcttgccagagcaggacat
ggtgctcctgcctacaagacaaagcaactaaaaaacaaccagtttcgttccactgtgatc
tttaatggattgaactttgtggggcagccttgtggcaataaaaaacttgctgaaaaagat
gcagctgcagaggcattgctgtggttgaggggcgatcgccattcatctgccagagatctt
gaccatgtgtcaatgctcttaaagaggaaaaatagaagtaagaaaagaacttga

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