KEGG   Citrus sinensis (Valencia orange): 102628348
Entry
102628348         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102628348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102628348
   03012 Translation factors [BR:cit03012]
    102628348
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102628348
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102628348
Translation factors [BR:cit03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    102628348
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 nSTAND3 AAA_19 Rad17 T2SSE ATPase
Other DBs
NCBI-GeneID: 102628348
NCBI-ProteinID: XP_006481608
LinkDB
Position
6:join(20290665..20291000,20291762..20291907,20292353..20292452,20292542..20292757,20292901..20292996,20293988..20294263,20294599..20294802,20294913..20295065,20296425..20296517,20296765..20296979,20297110..20297269,20297389..20297662,20297755..20297947,20298066..20298252,20298451..20298819,20298936..20299052)
AA seq 1044 aa
MSPRFLGATKSIFSRSKYLLVVAAPITRPRVLSTSSVSFPLKTAKPPVMSYRPNYQGGQR
RGGGGPSTSGRGGRRGGRGGGGGRGGGGGGRGEQRWWDPVWRAERLRQQAAEMEVFDENE
WWGKLEQMKCGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKALAVSKVPLPMY
RPDLDERHGSTEKELQMSIETERRVGNLLNSSQGNVPVNDSGIESSEVARRPKLSVKVAN
TISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVL
VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE
TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII
LRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKM
NSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGL
VESTIEFICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPSKFLVLPLHGSMPTINQ
REIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK
ASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGS
FLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQ
CLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNR
RERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHDLEMVCAILC
AGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVY
DSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKI
EDPRVDLSVEGKAVVSAVVELLHG
NT seq 3135 nt   +upstreamnt  +downstreamnt
atgtctccgcgctttctcggcgctactaagagcattttctcgcgctccaaatacctcctc
gtcgtagccgcacccataacaagaccacgagtgctctccacatcttcagtttccttcccg
cttaaaaccgctaaaccacctgtcatgtcataccgtcctaattaccaaggcggacagcgc
cgcggaggcggaggcccttccacatccggtcgcggtgggcgacgtggtggacgcggaggc
ggcggaggtcgcggcggtggtggaggaggtcgtggcgagcagcgttggtgggaccccgtc
tggcgtgccgagcgcttgaggcagcaagcagctgagatggaagtttttgatgagaacgaa
tggtggggtaagttggagcagatgaaatgtggggaagagcaagagatgataataaagcgg
aagtttagtcgtgcggatcagcaaaccctggctgatatggctcatcaattgggtcttcac
ttccatgcatataataaggggaaggccttggcagttagcaaagttccgctgccaatgtat
cgaccagatctagatgaacgtcatggatcaacggagaaagagcttcaaatgtccatagaa
actgagaggagagttggaaaccttctgaatagctcgcaggggaatgtacctgttaatgat
tctggcatagagtctagtgaagtagccagacgaccaaagcttagtgtaaaagtagctaat
accatctccccaccacagtccgattctgcaaaagagagacttaatgtcatacttaaggag
aggcaggagaaattgaagtcgagtgatagtgggaaggctatgctatctttcagagaaaag
cttcctgcattcaaaatgaaagctgagtttcttaaagctgttgcagagaatcaggtattg
gtagtttcaggagagacagggtgtggaaaaacaacacagcttcctcaatttattttggaa
gaggagttatctagtttgcgtggtgccgactgcaacataatatgcacacaaccccgtcgt
atatctgccatatctgtagcagctcgagtatcctcagaaagaggagagaatcttggcgaa
actgttggttatcagattcgtctggagtcaaagcgctctgctcaaacacggctcctcttt
tgcaccactggagtattacttcggcagttggttgaggacccagatttaagttgtgtgagc
catttgctggttgatgaaattcacgaaagagggatgaatgaggactttttgttaataatt
ctgcgtgacctacttcctcgacgtcccgatctgcgtctgatcctaatgagtgccacaatt
aatgctgatctgttttccaaatactttgggaatgccccaacagtacatataccgggattg
acttttcctgtgacagatttatttctagaggatgttttggagaaaactcgttataaaatg
aattcaaagttggacagctttcagggtaactcaagaagaagtagacggcaagattcaaag
aaagatcacttaaccgcattatttgaggatgttgatattgattcaaactataagaattac
agggcatctactagagcgtctcttgaagcttggtcagctgaacagattgatttgggtctg
gtggagtcaacaatagaatttatttgtcgccatgaaggcgatggagcaattcttgtattc
ctcacgggctggaatgacatttccaaactactcgaccagattaaggtaaacaaatttctt
ggagatcctagcaagtttctagttcttccactacatgggtcaatgcctaccatcaaccaa
cgtgaaatatttgaccgtcctccgccgaacaagagaaaaattgttctggcgaccaatatt
gcagagagtagtatcaccatagatgatgttgtgtatgttgtggactgtggaaaggcaaag
gaaaccagttatgatgctctaaacaagttggcttgtctattaccatcatggatttcgaag
gcctcagctcatcagagaaggggtcgtgctggccgtgtgcaacctggtgtttgttataaa
ttgtatccaagaattatccatgatgcaatgcttccctatcagttacctgaaattttacgg
acacctttacaagaactctgtctgcatattaaaagcttgcagcttggaactgttgggtca
tttttgtccaaggctcttcagccaccagatcctctggctgttcaaaatgcaattgaactt
ctcaaaacaattggggctttagatgacatggagaatcttactccgcttggtcgccatctt
tgcactctgcctgtggaccccaacattggaaagatgcttctaatgggagctatctttcaa
tgcctcaatcctgctttaacaattgcagctgctcttgcgcatcgcaacccatttgttctt
ccagtaaatatgcagaaggaggttgatgaagcaaagagatcctttgctggtgattcttgc
agtgatcacatagcacttctcaaagcttttgatggatataaggatgcaaaacgtaatcga
agggaaagagacttctgttgggaaaattttttatctccaataaccttgcagatgatggag
gatatgagaagccagtttctggatctgctatcggacataggctttgtagacaaatccaag
ggtcctagtgcttacaaccgatacagccatgatttggagatggtatgtgcaattctttgt
gctgggctctacccaaatgttgtgcagtgcaaaagaaaaggaaagcgagctgtattctac
acaaaagaagttgggcaggtggcactccatccatcttctgttaatgcaaaccaaaataac
tttccactgccttacatggtttatagtgaaatggtgaagacaaacaacatcaatgtctat
gactcaaccaatatatcagaatacgctttgcttctatttggtggtaatctcattcctagc
aaaactggggagggcattgaaatgcttggtggttaccttcatttctctgcatctaagact
gtactagagttgattcggaaattacggggggagctcgacaaacttttgaataggaagatt
gaggacccaagggttgacctttctgtggagggaaaggcagtggtttcggctgttgttgaa
ttgttgcatggttaa

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