Citrus sinensis (Valencia orange): 102628439
Help
Entry
102628439 CDS
T02983
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102628439
09123 Folding, sorting and degradation
03018 RNA degradation
102628439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102628439
03041 Spliceosome [BR:
cit03041
]
102628439
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102628439
mRNA degradation factors
5'-3' decay
Lsm complex
102628439
Spliceosome [BR:
cit03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102628439
Complex C
U2 snRNP components
102628439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
102628439
NCBI-ProteinID:
XP_006479772
UniProt:
A0A067G038
LinkDB
All DBs
Position
3:complement(join(44387058..44387177,44388962..44389120,44389293..44389295))
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttttcatacttcaaggatttggtgggcagagaagtgactgttgagttgaag
aacgatttggcaataagagggactctacattcagttgatcagtacctcaatatcaagctt
gagaatacgagagtggttgatcaagacaagtaccctcacatgctttcagtgaggaactgt
ttcatcagaggatcagtggttagatatgttcaactgcctcctgatggtgttgatgtcgac
ctgcttcatgatgccacaagaagagaagctcggggtggctga
DBGET
integrated database retrieval system
