Citrus sinensis (Valencia orange): 102628485
Help
Entry
102628485 CDS
T02983
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit00040
Pentose and glucuronate interconversions
cit01100
Metabolic pathways
Module
cit_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
102628485
Enzymes [BR:
cit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
102628485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
102628485
NCBI-ProteinID:
XP_006489947
LinkDB
All DBs
Position
9:join(6425837..6426163,6426409..6426540,6426635..6426802,6426936..6426956,6427311..6427518,6427658..6427739,6427844..6427952,6428050..6428166,6428276..6428494)
Genome browser
AA seq
460 aa
AA seq
DB search
MALERHSVQLLFFTIFIISYISRYTLCLANYHEPPYGSNYYLDEIYEYGYDSQAYPSYLS
SIEDGKSKDLIKQRTQILNLKNVGGFSKRGKTVNVDDFGAKADGTDDSKAFMQAWKEACS
NTGAVIVVVPVDKTYRLKPIRFSGPCKANLTVQIYGTLEASDDQSDYKKDGRHWIVFDNV
QNLVVEGGGTVNGNGKIWWENSCKINKSLPCKDAPTALTFYKGNNLVVSNLKIQDAQQIH
VSFQKCKNVLAFNLMVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQ
AQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSGTANGVRIKTWQGGSGYASNIIF
QNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSY
PCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctctagaaagacattccgttcaattattgttcttcacaatctttataatatcttac
atctcacgttacacattgtgcttggccaattatcatgagccaccttatggcagtaattat
taccttgatgaaatatatgagtatggatatgattctcaagcatatccttcatatttgagc
tctattgaagatggcaagtccaaggacttgatcaagcaaagaacccaaatcttgaacttg
aaaaatgttggtggcttttcaaagagaggtaaaaccgttaatgttgatgattttggagcc
aaagccgatggtaccgatgactctaaggcatttatgcaggcttggaaagaagcttgttca
aatacaggagctgtaattgttgtagtgcccgtagacaaaacctaccgccttaagccaatt
agattctcaggtccatgcaaagctaatctcacagtgcagatatatggaactttagaggca
tctgatgatcaatcagactacaagaaagatggcaggcactggattgttttcgataatgta
caaaatttagtagtcgaaggtggtggcactgtcaatggcaatggcaagatttggtgggaa
aattcatgcaaaatcaataaatctctgccatgcaaagatgccccaacggcactgacgttc
tataaaggcaacaatttggtagtgagcaatctgaaaattcaagatgcccagcaaatacat
gtttctttccaaaaatgcaagaatgttcttgcttttaatctaatggtaacagcacctgga
gacagtcctaatactgatggaattcatgtcacaaacacccagaacattcggattacaagt
tccaccataggaacaggcgatgattgtatttcaattgtaagtggttcacaaaatgtgcaa
gctcaagacataacttgcggaccaggccatggaatcagtattggaagcctaggaaaagga
aattcgaacgcttatgtttcagaagttacagtggatggagctaagctttcaggaactgca
aatggtgttaggatcaagacttggcagggaggatcagggtacgcaagcaacatcatattt
cagaacattgacatggttaacgttaaaaatcctataataattgaccaaaattattgtgac
caagatgatccttgcaaagaacagagctcggcagtgcacataaaaaatgttgtgttcaaa
aatattcgtggaacaagtgcttcagatgaggcagtgaaactcgattgcagtaagagctat
ccatgtgaggcaattgtgttggaaaacataaatttgcaaagtgaagaagatgaaccaaaa
gctttatgcaacaatgttgatgatttggctcaaagaggatctgttttcccacgctgtcct
tga
DBGET
integrated database retrieval system
