KEGG   Citrus sinensis (Valencia orange): 102628548
Entry
102628548         CDS       T02983                                 
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
  KO
K08775  breast cancer 2 susceptibility protein
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03440  Homologous recombination
cit03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102628548
   03460 Fanconi anemia pathway
    102628548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cit04121]
    102628548
   03036 Chromosome and associated proteins [BR:cit03036]
    102628548
   03400 DNA repair and recombination proteins [BR:cit03400]
    102628548
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    102628548
Chromosome and associated proteins [BR:cit03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     102628548
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     102628548
   FA (Fanconi anemia) pathway
    Downstream FA components
     102628548
SSDB
Motif
Pfam: BRCA-2_OB1 BRCA2 BRCA-2_helical
Other DBs
NCBI-GeneID: 102628548
NCBI-ProteinID: XP_006481108
LinkDB
Position
6:complement(join(17315419..17315475,17315571..17315738,17316013..17316223,17316302..17316364,17316608..17316750,17316988..17317170,17317247..17317442,17317966..17318037,17318148..17318259,17318334..17318409,17318509..17318559,17318658..17318739,17318815..17319012,17319091..17319213,17319631..17319785,17319893..17320017,17320104..17321114,17321564..17321725,17321796..17321946))
AA seq 1112 aa
MSTWQIFSDADNNFKWQVSGRILQPEPNGSSIQPHSSSFRLPSMSDLLLEGHSKLPENGN
EGADNVSTPMFKTGSGKVVPLKQSSIEKALSVLGTDNDCGISFAGEEHPRENGFGFSNSL
FQTGSGKTVNISSAGLVRAKSLLGLEEGRNDWSFEGLQHTRMTSTPRFEVKEGVKGNVFE
SDTSVLRPSSISKAGFAESRFKNKISSNMMQTEGLNSAPKPPQIKFQTAGGRSLSVSSDA
LQYARNLLGDPELGTFFHEVDVDQLDLTSFKHRRFDDSSSNKENDVFTSFFRLGTAGTKT
ASKNFTSPLRLFSNPVRSRINSENINTSANLIEKFDAVDHDGVSGLNGKIPSVKKPIRST
HGHKAIMDNSVEDDIGSKINSLGRSSGKPLADITNSTSTACANIKQTCEKKRLLRSSISP
FKRPRISKFSTPLRTNLSSPNGLSTLSSEQSGCKKKVLSRYPYQIPRMSMKEYFGMPPSA
QGMLDHLQDQVRQMKSHNADKYMFHDASGLNCIGAEALFNMLAQSGASTQYASKLWVSNH
YKWIVWKLACYERCYLAKSAGKFLTVFNVLEELKYRYEREVNNGHRSAIKRILEGDALPS
SMMVLCISAIHMNCVPKIETHPEAQHGAENSYAAKLELTDGWYSVDAFLDVLLSKHLAAG
KLFVGQKLRIWGAILCGWVGPVSPLEASGSISLQLNINGTYRAHWADRLGFCKGFGAPLA
FRCIKSNGGPVPRTLVGVTRIYPVLYKERLSDGRSIVRSERMECKVMQLYQHRQSMVVEG
IVSEFQRGNKDSHILNDSNSEGAKLFKMLETVAEPEVIMAEMSPEQLTSFATYQAKLEAT
RQSNMERSIEKALENAGLRERDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQ
CELVEGQAYAILGLVPMNSDSNTLYLQARGSTTKWQPLSPLATEHFKPFFSPRRSVLISN
LGEVPLSSEFDIAAFVVHVGDVYEDSQQKKQWIFVTDGSMLELQLEDLSKSLLAISISSP
YIDDDSFSPINYNLVGSTVGFCNLIKRPKDHLNHIWVAEATENSSYFLSFDFPTCSHLRS
AAASAQSWAKISSLIIDKLKENVLFIIGDRKC
NT seq 3339 nt   +upstreamnt  +downstreamnt
atgtccacgtggcagatattctccgacgccgataacaattttaaatggcaggtatccggt
aggatactccagccggaaccaaatggttcctcaattcagccgcacagctcgagtttccgt
ctcccttccatgtccgatctcttgcttgaagggcactcgaagcttccagaaaacggaaac
gaaggagctgataatgttagtactccgatgtttaaaaccggttcgggcaaagtggtgccg
ttgaagcagtcttcgattgagaaagcgttatctgttctcggcactgacaatgactgtggc
atttcgtttgctggtgaagagcacccgagggaaaatggatttggcttctccaattctctt
ttccagacaggttctggaaaaactgttaacatatcctctgctggtttggttagagcaaaa
tcattgttgggactggaagaagggcgtaatgattggagttttgaaggccttcaacataca
aggatgacatcaactccccgttttgaagtgaaagagggagtgaagggtaatgtatttgag
agtgatacatcagttctaaggccttcatcaattagtaaggctggttttgccgaaagtaga
ttcaagaacaagataagttcaaacatgatgcaaacggaagggcttaattctgcacccaaa
ccgcctcagattaagttccaaactgcaggaggaagatctttatctgtctccagtgatgca
ttgcagtatgcaaggaaccttcttggtgatcctgagttagggacattctttcacgaagta
gatgtggatcaattggatcttacatcttttaaacacagaagatttgatgattcttcttca
aacaaggaaaatgatgttttcacttcctttttccgtctaggaacagcagggaccaaaaca
gcatcaaaaaatttcacatctcctttacggttgttttcaaaccctgtgaggtcgcggatc
aattcagaaaatataaacacgtctgctaacttgattgagaaatttgatgcagttgaccat
gatggagtcagtgggttgaatggtaaaattccttccgtaaagaagcccataagaagcaca
catggccataaagccataatggacaactcagtggaagatgatattggttcaaaaattaat
tcacttgggaggtcatctggtaagcctttggctgatattacaaatagtaccagcacagct
tgtgcaaatattaagcaaacttgtgaaaagaagagactattgagaagttctatttctcca
ttcaagaggccccgtatctccaaattctccaccccgttgagaacaaatctttcttcacct
aatggtttatctactttatcatcagaacaatctggttgcaaaaaaaaagttctctctaga
tatccatatcagattcctagaatgtccatgaaggaatattttggaatgcctccatcagcc
caaggcatgttggatcatttgcaagatcaagtaagacagatgaaatctcataatgcagat
aaatacatgtttcatgatgcatctggcttaaattgcattggagcagaggctcttttcaat
atgttagcgcaatctggagcttctacgcaatatgcctctaaactatgggtgtcaaatcac
tataagtggatagtctggaaactggcatgctatgaaagatgctacttagccaagtctgct
ggcaaatttttgactgttttcaatgtgcttgaagaattgaagtatagatatgagagagaa
gtaaataatggccatcgatctgcaattaagcgaatcctggaaggggatgcattgccttcc
tcaatgatggtgctatgcatttcagccattcacatgaattgtgtaccgaagattgagact
catcctgaggcacaacatggggctgaaaatagctatgctgcaaagctggaactgactgat
gggtggtattcagttgatgcttttttggatgtattgctgtcgaagcaccttgcagctggg
aaactttttgtgggacagaaactcaggatctggggagcaatattatgtggttgggttggg
cctgtttctcccctcgaggcttcaggatctattagcttacagttgaacataaatgggaca
tacagagctcattgggctgatcgattgggattttgcaagggttttggtgctcctttggca
tttagatgcatcaagagtaatggaggcccagttccaaggactttagttggggtcacacgg
atatatcctgttctgtacaaggagaggttaagtgatgggagatctattgtgagatcagaa
aggatggaatgtaaagtgatgcaattataccagcacaggcagtctatggttgtagaagga
attgtttctgagttccaaagggggaacaaagattctcatatacttaatgatagcaacagt
gaaggagcaaaacttttcaaaatgcttgaaacagtagctgaaccagaagttattatggca
gaaatgagtccagagcaactaacttcttttgccacttatcaagcaaaattagaggcaaca
aggcaatcaaatatggaaagatcaattgagaaggccttggaaaacgctggcttaagagag
agagatgtcacaccatttatgagggtgagggtggttggattaactggtaaaaattatcaa
ggaaagggcagctctagagaaggcattataacaatctggaacccggcagagaaacagcaa
tgtgaactggttgaggggcaggcatatgccattctagggcttgtaccaatgaactctgat
tcaaatactctttatttacaagcaaggggatctactacaaagtggcagcctctatctcct
ctagcaactgaacattttaagcctttcttcagtccccgcagatcagttctaatttcaaat
ttgggtgaagttccactttccagtgaatttgatatagctgcattcgtggtgcatgtggga
gatgtttatgaggattctcagcaaaagaaacaatggattttcgtcacagatggctccatg
ctagagttgcaattggaagatctatcaaaatctttacttgccattagcatcagttcacca
tacatagatgatgattcattttcgccaattaactataaccttgttggatccacagttggc
ttctgtaatctcatcaagagaccaaaagaccacttaaatcatatttgggtagcagaagca
actgaaaactcatcatattttttaagtttcgatttcccaacctgttctcaccttagaagt
gccgctgcctctgctcaaagttgggcaaagatctctagcttgatcattgacaagcttaag
gagaatgttttatttattattggggatcgtaaatgttaa

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