Citrus sinensis (Valencia orange): 102628661
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Entry
102628661 CDS
T02983
Name
(RefSeq) WD-40 repeat-containing protein MSI3
KO
K10752
histone-binding protein RBBP4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03082
ATP-dependent chromatin remodeling
cit03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102628661
03083 Polycomb repressive complex
102628661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cit03036
]
102628661
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
102628661
Histone modification proteins
HAT complexes
HATB complex
102628661
HDAC complexes
Sin3A-HDAC complex
102628661
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
102628661
PRC2.2
102628661
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
102628661
Heterochromatin formation proteins
Other heterochromatin formation proteins
102628661
Chromatin remodeling factors
NuRD complex
102628661
NuRF complex
102628661
NuRF complex (fruit fly)
102628661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
WD_LRWD1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
MIOS_WD40
Beta-prop_HPS5
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
102628661
NCBI-ProteinID:
XP_006486738
UniProt:
A0A067FXA8
LinkDB
All DBs
Position
8:join(1025773..1026087,1026538..1026858,1026959..1027102,1027235..1027359,1027720..1027815,1028393..1028612)
Genome browser
AA seq
406 aa
AA seq
DB search
MAAEEQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFA
VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNR
ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG
YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL
MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS
HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA
KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDFLAATDD
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaggagcaagacgcgagcttggatcaagtggaggaggagttcacggtatgg
aagaagaacacgccgtttttgtacgatctgattgtctctcacccgttagagtggccttcg
cttaccgtccactgggtcccatcgcctccgcaaccctactcagcggaccccactttcgcg
gtgcacaagttcgtgctcgggacccacacctccgaggattttcccaactttctcatgatc
gccgatgctgtgctgcccaccaaagactcggagtctaacgtcggcggcaaaaatgaaaat
cctgtcatccccaaggtggagatagcgcagaagatacgtgttgatggggaagtgaataga
gcacggtgtatgccacagaaacccaatcttgttggtacaaagactagcagttgtgaggtg
tatgtgtttgactgtgccaaacaggcagaaaagcagcaagatgattgtgatcctgatctg
aggttgaagggtcatgataaagagggttatggattgtcttggagtccctttaaggaaggt
tatcttgtgagtggttcccatgacaataagatttgcttgtgggatgtgtctgcgttggct
caagacaaagtgattgatgcaatgcatgtctatgaggctcatgaaagtgtggttgaagat
gtgtcgtggcatttgaagaatgagaatttatttgggtctgcaggcgatgattgccaactg
atgatctgggacttgcgcactaatcaaactcaacagcgtgtaaaagctcatgagaaagag
gttaactatctatcttttaatccatacaatgaatgggttctggcgactgcatcttcagac
actactgttgctttgtttgatatgcggaagatgactgtgccgttacacattttaagtagt
cacacagaagaagtgttccaggtagaatgggatcctaatcacgaaaccgtgctggcttct
tcagctgatgacagaaggctcatggtttgggaccttaacaggattggggacgagcagttg
gaattagatgccgaggatggtcctcctgagctccttttctctcatggaggtcacaaggcc
aagatatcagatttctcttggaacaaaaatgacccgtgggtcatttcaagtgtagccgac
gacaatactgttcaggtctggcaaatgacagacagcatttaccgtgatgacgatgatttt
ctagccgccacagatgattag
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