Citrus sinensis (Valencia orange): 102628865
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Entry
102628865 CDS
T02983
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102628865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102628865
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102628865
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102628865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102628865
NCBI-ProteinID:
XP_006465196
LinkDB
All DBs
Position
7:complement(14669481..14670305)
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AA seq
274 aa
AA seq
DB search
MSLLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEY
HYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIEL
LKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLP
DTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA
STFRKLKENFFSSSLEKYAGVLYGLGVENGQNTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgttgccaaagggcgattccatccaaattcgagaggtgtggagtgacaatctt
gaactagaatttgatttgattcgcaaaattgttgatgattacccttatgttgcaatggac
actgaattcccgggaattgcattacgacctgtgggctctttcaagagcagttatgaatat
cactaccaaactttgaaaagcaatgttgatatgttaaagctcatccagttgggtctgaca
ttttcagatgagaatggtaacttgcccacttgtgggacagataaatattgtgtttggcaa
tttaattttcgggagttcgatgttaatgaggatatctttgccaatgattcgattgagctt
ttgaaacaaagtgggattaattttacaaaaaataatgagataggtattgatgcaatgaga
tttggtgagttaatgatgtcatctgggattgttttgagtgatagcatgcattgggtgaca
tttcatagtgggtatgattttgggtatttgctaaagcttttgacgtgccagaatctgcct
gatacgcaagtggagttctttaatttgatcagaatttattttccgaccgtgtatgatatc
aagcacttgatgaagttttgtaatagccttcatggaggattgaacaaacttgctgagttg
ttggaagttgaaagagttgggatttgtcatcaagcaggttcagatagtttgcttacagct
agtacattccgaaaattgaaagaaaacttctttagcagctctttggaaaaatatgctggt
gtcttatatggtttaggcgttgagaatggacaaaatactcattga
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