Citrus sinensis (Valencia orange): 102629136
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Entry
102629136 CDS
T02983
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102629136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102629136
03019 Messenger RNA biogenesis [BR:
cit03019
]
102629136
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102629136
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102629136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
102629136
NCBI-ProteinID:
XP_024950908
LinkDB
All DBs
Position
2:complement(join(28028241..28029128,28029951..28030037,28030999..28031067,28031384..28031494,28031593..28031755,28034385..28034771,28035190..28035590))
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AA seq
701 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDAGPGMPTASNPAIQSDSTAAAAAAAANANHAAPSSSGAAPDHA
SAPVPHHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDC
VYKHTNEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEVLQKIQQISSYNHGNPNK
HFQQRGAFSHQTDKSQFSQGPNAVNQGAAGKSSTAESANVHQQQLVQQPQQQGTQTTQMQ
NLPNGLPNQTNRNATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
AENVILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSF
HKTRHLRNPYNENLPVKISRDCQELEPSIGEQLAALLYLEPDSELMAISVAAEAKREEEK
AKGVNPDNGGDNPDIVPFEDNEEEEEEESEEEEESLGTASQGRGRGRGMMWPGPMPLARG
ARPVPGMRGFPPMMIGADGFSYGVTPDGFPMPDLFGVAPRPFAPYGPRFSGDFTGPGGMM
FPGRPPQPGSVFPPNGFGGMMMGPGRPPFMGGMGPAATNPRGGRPVGVPPPFPNQPQSSQ
NSSRAAKRDVRGSINDRNDRYSAGSDQGRAQEMGGPGRGPDDEVQYQQEGSKANQEDQYG
SRNFRNDESESEDEAPRRSRHGEGKKKRRDSEGDAAASSDN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggaaggaggtctcagcttcgacttcgagggcggcctcgacgcgggcccc
ggtatgcccaccgcctccaaccccgcgatccaatccgattccaccgctgcggcggccgct
gccgcggccaatgccaaccacgctgccccttcttcctccggggcggctcccgaccatgcg
tcggcgccggtaccacaccattcggggcggaggagcttccggcagacggtttgccggcac
tggctgcgtagtctttgtatgaaaggtgacgcttgtgggtttcttcatcaatacgataag
tctcggatgccagtctgtcggttttttagattgtttggggagtgccgtgaacaggattgc
gtttataagcacactaatgaggatatcaaagagtgtaacatgtacaagctgggtttttgt
ccaaatggtcctgattgccgctataggcatgtgaagttgcctggacctccaccttctgtg
gaagaagtgcttcagaagattcagcaaataagttcatacaatcatggcaaccctaataaa
cattttcaacagcgaggtgctttctcccatcaaacagataaatctcagttttcacaaggt
cccaatgctgtcaatcaaggtgcggctggaaaatcttctacagcagagtcggctaatgtg
catcagcagcagctggttcaacaaccccaacaacagggcacccagaccacccagatgcaa
aaccttccaaatggcctacctaatcagacgaacagaaatgctacacccttgccccaagga
atatctaggtattttattgttaaaagctgcaaccgtgaaaatcttgaattatctgtacaa
caaggagtatgggcaactcaaaggagcaacgaagctaaactaaatgaagcttttgactct
gctgaaaatgtgattttgatcttctcagtcaaccggactcggcatttccagggttgtgcg
aagatgacctcaaaaattggtgggtctgtgggtgggggaaactggaaatacgcacatgga
actgcacattatgggaggaatttctcagttaaatggttgaagttatgtgagctgtccttc
cataaaactcgtcatttgaggaatccatataatgagaacttaccagtgaagattagcaga
gattgtcaggagttagagccctctattggtgagcagttggctgccttgctttatctggaa
ccagatagtgaacttatggcaatatcagttgcagctgaagcaaaacgagaggaggaaaaa
gcaaagggagtgaatccagacaatggaggggataatccagacatagtcccatttgaggac
aatgaagaggaggaagaagaggaaagcgaagaggaggaagagagcttaggaactgcaagc
cagggtagagggaggggcagaggaatgatgtggcctggtccaatgccactagcccgtggg
gcaagacccgtgcctggtatgcgaggttttccccctatgatgataggtgctgatggattt
tcatatggtgttacaccggacggttttccaatgccagatcttttcggtgtggctcctcgt
ccttttgctccatatggtcccaggttctctggtgatttcacaggcccaggtggcatgatg
tttcctgggcgacctcctcaaccagggtctgtatttccaccaaatggattcggcgggatg
atgatgggaccaggacggcctccttttatgggaggaatgggacctgcagctacgaatcca
agaggtggacggccggttggcgtgcccccaccgttcccgaaccagccacaatcctctcag
aacagtagccgtgctgctaagagagatgtgaggggctctattaatgaccgtaatgacaga
tatagtgcaggatcagatcagggcagagctcaagaaatgggaggtccaggcagggggcca
gatgacgaggtgcaatatcagcaggaaggatcaaaggctaaccaggaagatcaatatggt
tcacgaaacttcagaaacgatgagagtgagagtgaagatgaggcaccgaggaggtcaagg
cacggtgaggggaagaagaaacggcgagactcagaaggggatgctgctgccagttctgat
aactag
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