Citrus sinensis (Valencia orange): 102629299
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Entry
102629299 CDS
T02983
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102629299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102629299
Enzymes [BR:
cit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
102629299
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102629299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
ABC_tran
AAA_29
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
102629299
NCBI-ProteinID:
XP_006480447
LinkDB
All DBs
Position
6:join(3762037..3762255,3762385..3762453,3762818..3762913,3763014..3763255,3763361..3763499,3763609..3763665,3764148..3764282,3764925..3765160,3765550..3765594,3765701..3765788)
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AA seq
441 aa
AA seq
DB search
MAYGGGVPAAMSGLASASASTIKLVKLERESELRIEVGEMPLRLRLLNGNAEIYGTELPP
EIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHAKASP
SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA
TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG
MVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG
GVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIG
ADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLA
PSPGMLPSKYLIAGTLTWLET
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggcggcggcgtaccagcggcgatgagtggcttggcttcggcttcggcttca
acaataaagctagtgaaattggagagagagagtgagctgagaattgaagtgggtgaaatg
ccattgcggcttcggcttcttaatggtaatgctgaaatttatggcactgaattgccccct
gaaatctggctcacttttcctcctcgtctcaaatttgctgtatttacttggtatgaagcc
actattgaaatggatggcactcctgaaactgattatacagctgatgagacgcccatggtt
agttatgtaaacgtgaatgcagtgctagaaggaaggaggaaccatgctaaagcatcgcca
tcgaaggactctgatgcttctcagggtcctcgagtaattgttgtaggacctacagattcg
ggtaaaagcacactgtcgaggatgcttcttagttgggcagcaaaactaggttggaaacct
acttttgttgacttggatattggccaaggagcaataacaattcctggatgcattgctgct
actccaattgaattgcccattgatcctgtggaaggaatccctcttgaaatgcctcttgtt
tacttctttggacacgcaactcctagcaacaatgtagagttgtacaaagttcttgtgaag
gagcttgcccaaatgctggaaaggcagtttaatggtaatgcggaatctcgagcagctggc
atggtgataaacaccatggggtggatagaaggtgtagggtacgagttgcttctccatgcg
attgatacattcaaagccaatgttgtcttggttttgggtcaggaaaaacttttcagcatg
ctgagggatgtattaaagaacaggcctaatgtggatgttgtgaaacttcaaaagtcgggt
ggtgttgtatcccgaaattcaaaagttcgtcaaaaggccagaagttataggataagggaa
tatttttacggcctcacaaatgatctttccccgcatgctaatgttgctaatttcagcgat
ttcctagtctatcgaattggaggaggaccacaggccccaagatcagctctgccaattgga
gctgatcctgttgccaaccctctaagaatagttccagtgaatgttgaccaggagttgctc
catcttgttcttgctgtttcatatgcaaaagacgctgatcaaattatctcaagcaacgtg
gctggttttatatttgttacaaacgtcgacacacaaaggaagacgattacatatctcgca
ccctcacctgggatgctcccaagcaaatatctgatcgcaggaacattgacatggcttgaa
acgtga
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