Citrus sinensis (Valencia orange): 102629610
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Entry
102629610 CDS
T02983
Name
(RefSeq) transcriptional elongation regulator MINIYO
KO
K20826
RNA polymerase II-associated protein 1
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102629610
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
102629610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_N
RPAP1_C
Motif
Other DBs
NCBI-GeneID:
102629610
NCBI-ProteinID:
XP_006486649
LinkDB
All DBs
Position
8:complement(join(540715..540894,541023..541232,541457..543757,543923..544114,544409..544666,544749..544854,545106..545293,545522..545649,546053..547082,547235..547465))
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AA seq
1607 aa
AA seq
DB search
MEKRQQQGKNTSSSSQNRKSFGTNKPQISQDGAFHVVGSILEKGISDEPQNKPFSPTPPP
KPSVLPFPVARHRSHGPYWGPVDSYKGKNDDNDEEEDDDLDARSLADFASAVERKEKKDL
NFSNWKEQTLNHDSNVSRLMKTGKCKKDGIETKKKSSGPSLVDLDVSVAMEMDVEDGPSK
RLAVNKTKEAVTSGSAVGMEIDESGRLHYLENAEDDSSNHAPIGSQHVVERPSHDTSAEA
HFEKMDAGIVRVLNERDKKSWTGNTVSSSRSNNIGNEQESMSLESEIDVENRARLQSMSP
DEIAQAQAEIMDKMNPTLLNLLKKRGEKKLKQQKSSSPVNASNIVEPHNAVNESQKAIRD
KLLGGNSPSQRDLYNVAQNLDKSGSFLWNAWSKRVEAVRELRFSLDGSVVSHDFVPESLT
SDTSAQNRLSADNVGERDYLRTDGDPDAAGYTTKEAVALSRSVVPGQRGFGLKLLHSVLD
KALHNIYQNQVRHTLRHGNKVDKSTDWEAVWAYALGPEPELVLSLRISLDDNHNSVVLEC
LKVVQCALSCDLNEYFFNISEKIGTFGEDIYTAPVFRSKPEIALGFLHGGYWKYSAKPSN
ILLFGKTVYDETDEEHTIQDDIVIAGQDFAAGLVRMGILPKLLYLLETCRAGALEEDIII
SIFIAIARHSPIGANAILNCERLIETVIHRFTINNSAEVLPSKIKSVCLLKVLAQSDKKT
CMEYIRNGFFRAMTWHLYRPFSSLEQWLKLGRENCVMSSGLVVEQLRFWRVCIQNGYSVS
YFPDIFPALCLWLIPPSVEKLIENNVLREFTSISAEAYLVLEALAMWLPNFNSQEHPMCA
EMEIWSWTNVAPMLDSAVKWLALKNTLLVSEDSDRHEGIRSQSVSQGLSVSPLLWVHSAI
MHFLTRVLERVIAEDGITLRRSGQYLSLLPEFVPKLGLEIIKNGFLSSLVVNEKEYGSYI
APGCSFIAELCRFRRQNEYETSLASTSCLHGLVRVIVSIDKLIRLGKSAITYTASQGNSL
SKEEKILEQGILERSLVDLRWLMKNSVELFSSECHFVQCIEMFGRGGPAPGVGVGWGAPG
GGFWSRAVLLAQTDARLLIDLLEIIQMMPVSELSTNDEMNFASHIVDSAFGICLSAGPRD
KVIVEKAFDILVQVPVLKSLALFMHSFLQSKERMKLFGWELKEEDYLHFSNILASHFKSR
WLDIKKKSKAIDDNSSRGNKKGSTSLDTIPEELDSSNIRGQDHCCSSLTVEWARQRLPLP
MHWFLSPIATISDGYHGCLQKIPKMMVLDPNMLEVAKAGLFFLLGIEAMASFLSSKVPSP
VQSVPLFWKLHSLSVSLLAGMGVLEEEKSKDIFEALQKHYGLLLHEAWSSRVAEHNLEKN
AKLLPETGKSCNVELLRFQSEVNESYSLFVETLVEQFAAISYGDLVYSRQVAVYLHQCVE
APVRLSAWKALSNVHALELLPSLDKCVAEAEGYLEPIEDNEEILEAYVKSWTAGALDRAS
TRGSMAYTLVLHHLSSFIFLSNAGEKLILRNKLVKSLLRDYSRQRRHERMMLDLIRYNKP
SKAQMLVQNGGSALPSNDVEKRFGLLTEACEGNSSLLIMVEKLARTS
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaggcagcagcagggcaaaaacacttcctcgtcaagccaaaaccgaaagtcg
ttcggaaccaacaagcctcaaatcagtcaagacggtgcgtttcacgtagttggtagtata
ctcgaaaagggaatctccgatgagcctcaaaacaagcctttttctcccacacctcccccg
aaaccctccgttttgcctttccccgttgcccgccaccgctcccacggtccctattggggt
ccagtagacagttataagggcaagaatgatgataatgatgaggaggaggatgacgacctt
gatgctcggtcacttgcagattttgctagtgcagtggagaggaaagagaaaaaagattta
aattttagcaattggaaagagcaaaccctgaatcatgattcaaatgtctcacgcctaatg
aaaactggaaaatgtaagaaggatggaatagaaacaaaaaaaaagtcttctggcccatct
ttagtcgatttggatgtatctgttgccatggaaatggatgttgaggatggtccaagtaag
cgcttagctgtaaataaaactaaagaggctgtgactagtggttcagctgttggcatggag
attgatgaaagtggtagacttcactatttagagaatgcagaagatgatagctctaatcat
gcacccataggcagccaacatgttgtggaaagaccttcacatgatacttctgcggaagct
cattttgagaaaatggatgctggaatagtaagggtgctgaatgaaagggataaaaaatct
tggaccggtaatacagtttccagttccaggtcaaataatattggaaatgaacaagagtcc
atgtctcttgagagtgagattgatgtagagaatcgtgcccggttgcagagcatgtctcct
gatgaaattgctcaagcacaggctgagataatggacaagatgaaccccacattactaaat
ttactgaaaaagcgaggtgagaaaaaattgaagcagcaaaagagctcaagcccagttaat
gctagcaacattgtagaaccacacaatgctgttaatgagagccaaaaagctataagggac
aaacttcttgggggtaactctccttcacaacgtgatctatacaatgttgcacagaattta
gacaaatctggtagctttttgtggaatgcttggagcaagagggtagaggctgtacgggaa
ttaagattttctttggatgggtctgttgtttcccatgactttgtcccagaatctttgacc
agtgatacatctgctcaaaataggcttagtgctgataatgttggtgagcgtgattaccta
aggactgatggtgaccctgatgcggcaggttacactaccaaagaagctgtggctcttagt
agaagtgtggttcctggacaacggggctttggattgaagctccttcattctgtgcttgat
aaggcattacacaatatctatcaaaatcaagtcaggcataccttgagacatggtaataag
gttgacaaatctactgattgggaggctgtttgggcttatgctcttggcccagagcctgaa
ctggttttatcattgaggatttcacttgatgataaccacaattctgtggttttagaatgt
ctaaaagttgttcagtgtgctctgagctgtgacttgaatgagtacttcttcaatatctca
gagaaaataggaacttttggggaggacatttatactgccccggtattccgcagtaaacca
gagattgcccttggttttcttcatggtggatactggaagtacagtgccaaaccttctaat
attcttctgttcggcaagactgtgtatgacgagactgatgaggagcatacaattcaggat
gatattgttattgctggacaagattttgctgcaggtttggttcggatgggaattcttccc
aagcttctctatttattggagacatgccgtgcaggggctttggaagaagacatcattatt
tctatttttattgctattgcaaggcattcaccaataggtgcaaatgcaattctgaattgc
gaaagacttatcgagacagttattcacagatttaccattaacaacagtgctgaagttcta
ccttctaagatcaaatctgtttgcctcttaaaggtgttggctcagtctgataagaagact
tgtatggagtacataagaaatgggtttttccgggccatgacatggcatttatatcggcct
ttttcttcccttgagcaatggttaaagttgggaagggaaaactgtgtaatgtcatctggc
ttggtggttgaacaacttcgattttggagagtgtgcattcagaatggctatagtgtatca
tacttcccagatatctttcctgctttatgcctgtggttaattccaccttcagttgaaaaa
ctgatcgagaataatgttctgagggaatttacttccatctcagcagaggcttaccttgtt
cttgaggctttggctatgtggcttccaaacttcaattctcaggagcatcctatgtgtgct
gaaatggaaatctggtcctggactaatgttgctccaatgcttgattctgcggttaagtgg
ttagctttgaagaacactctacttgtgtctgaagactctgacaggcatgaaggtatcagg
agtcagtcagtttctcaaggcttatctgtttctccgttgttgtgggtgcattctgctatc
atgcattttcttacaagagttcttgagagggtgattgcagaagatggcataaccttgcgt
agaagtggccagtatttgtcactgttaccagaatttgttcccaagcttggacttgaaatt
attaagaatgggtttttgagttccttggttgtaaatgagaaagagtacggaagttatatt
gctccaggctgctcatttattgcagaactatgtcgtttcagacgacaaaatgaatatgaa
acatccttggcatccacgtcttgtcttcatggactagttcgggttattgtttctattgat
aagttgattcggttaggtaagtctgcaatcacttatactgcttcccaagggaacagtctc
tctaaagaagaaaaaatacttgaacaggggatccttgagcggtcactggttgacttgcga
tggttgatgaagaattctgtggagttgttttcatccgagtgtcactttgtgcagtgtatt
gaaatgtttggcagaggtggccctgctcctggtgtgggagttggctggggtgctcctggt
ggtggtttttggtccagagctgttttattggcacaaacagatgcacggttgctcatcgac
ttgcttgaaattattcaaatgatgcctgtctctgagttatctacaaacgatgagatgaat
tttgcttcacatattgttgattctgcctttggaatatgtttatctgctgggccaagggat
aaagttattgtagagaaggcatttgatattttggttcaagttcctgttttgaagtctctt
gctctgtttatgcacagttttcttcagtctaaagagagaatgaaattatttgggtgggaa
cttaaagaagaggattacctgcacttcagcaacatattggcttctcacttcaaaagtaga
tggttggacattaagaaaaaatctaaagcaattgatgacaatagtagccgtggcaataag
aaaggaagtacttctctggataccatacctgaagagttggactcatcaaatattagaggc
caagatcattgctgcagttcgttgacagtggagtgggctcgccagagactgcctcttccc
atgcattggtttctcagtccaattgcaaccatctctgatggctaccatggttgtcttcaa
aaaattcccaagatgatggttctggaccccaatatgctcgaggttgcaaaagctggactt
ttctttcttctcggaattgaagctatggcctcattcctatcctctaaagtcccctcccct
gttcagagtgtaccattattttggaaattgcattctttatctgtttcactacttgctgga
atgggtgtgcttgaagaagaaaagagtaaagatatatttgaagctttacagaagcactat
gggctattactgcatgaagcatggtcaagtagagttgctgagcacaatttggagaaaaat
gcgaagttattacctgaaactggaaagagctgtaatgtagagcttctgaggtttcaatca
gaagttaatgaaagttattcattatttgtagaaactcttgtagagcagtttgctgctata
tcttatggtgatttggtatatagccggcaagttgctgtttatttacaccaatgtgttgaa
gcccctgtccggctttctgcctggaaagcactgtctaatgttcatgctcttgaacttctg
ccatctcttgataaatgtgttgctgaggctgaagggtaccttgaaccaattgaggataac
gaagaaattttggaagcttatgttaagtcttggactgccggtgctcttgatagagcttca
acacgaggttcaatggcatatactctggtccttcaccacctttcatcttttatattcctc
tcgaatgctggtgagaagttaattctgcggaataagctagtaaaatctcttctgcgagac
tactcgcgtcagcggcgacacgagagaatgatgttggatcttatacgatataacaagcca
tctaaagctcaaatgctagtgcaaaatggaggttcagcactgccatcaaatgatgttgag
aagagatttgggttattaacagaagcttgtgaaggaaactcttctcttctgattatggtg
gagaagcttgcaaggaccagttaa
DBGET
integrated database retrieval system
