Citrus sinensis (Valencia orange): 102630056
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Entry
102630056 CDS
T02983
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03013
Nucleocytoplasmic transport
cit03015
mRNA surveillance pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102630056
09122 Translation
03013 Nucleocytoplasmic transport
102630056
03015 mRNA surveillance pathway
102630056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102630056
03041 Spliceosome [BR:
cit03041
]
102630056
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102630056
TREX complex
102630056
Spliceosome [BR:
cit03041
]
Complex C
Other components
EJC/TREX
102630056
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102630056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
102630056
NCBI-ProteinID:
XP_052299449
LinkDB
All DBs
Position
6:complement(join(13449123..13449333,13449774..13449958,13450040..13450108,13450550..13450699,13450834..13450989))
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AA seq
256 aa
AA seq
DB search
MTSALDMSLDDIIKSNKRSSSRWRGGGGRGSGLGPARHTFKRSVNRTAPYSKPVQAPQAT
WPQNMIFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR
SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGN
EIGTSRSHLRMGGAIPIERPRHGRGGLGGRGGRGGARGGRGRGRGQGAKPNLSVEDLDAD
LEKYHIEAKQSDGMVH
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgactagcgccttggacatgtctctcgatgatatcatcaaatccaacaagaggtccagt
tctcgctggcgcggcggaggcggcagaggttcgggcctaggccccgcccgtcacaccttc
aagcgcagcgtcaacagaacggcgccctattccaagccggttcaagctccgcaagccacg
tggccacagaacatgatcttcaacggtgctgttgcagctgctgcggctcgatcttcatcg
atagagagtggcaccaaactttatatttcaaacttggaatacggtgtttctaatgaagac
atcaaggagcttttttcagaggttggtgaacttaaacggtgttctgttcattttgatagg
agtggaagatcaaagggaactgcagaagttgtcttaacacgacgagctgatgctatagca
gctgtaaagagatacaataatgtccagctagatggaaaaccaatgaaaattgagataatt
ggaacaaatattggacctccagctgctgtgcttccaattacaaatgtcatgtatggaaac
gaaattggcacttcaagaagtcacctaagaatgggaggtgccattcccattgaaaggcct
cgccatggccgtggtggcctcggtggccgtggaggcaggggaggtgccagggggggtcgt
ggaagaggtagaggtcaaggtgcaaagccaaacctttctgtagaagatcttgatgcagat
ttggagaagtaccatatagaagcaaagcaatcagatggcatggttcattga
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integrated database retrieval system
