Citrus sinensis (Valencia orange): 102630341
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Entry
102630341 CDS
T02983
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102630341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102630341
Enzymes [BR:
cit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102630341
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102630341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102630341
NCBI-ProteinID:
XP_006474883
LinkDB
All DBs
Position
9:complement(join(28603901..28604729,28605185..28605455,28605537..28605663,28605782..28605895,28606230..28606558,28607097..28607227,28607470..28607804))
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AA seq
711 aa
AA seq
DB search
MKKRWPITILYRAFSSSTTSTTASFPLKHVKKSNFDSALSSLRHHIQAADFVAIDLEMTG
ITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQR
QELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYKDES
LDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFE
TIFFKMRPAISLNGFTSHQLRLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESVKK
MLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPL
TAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL
SLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA
HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH
LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKESLDRNNDPISVL
HPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHES
LRKVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgatggccgattacgatactctatcgcgccttcagctcttcgacgacgtcg
acgacggcgtcgtttcctctaaaacacgtgaagaaatcaaacttcgactcggcgctcagc
tcgcttcgccaccacatccaggccgctgatttcgttgccatcgacctcgaaatgaccggc
atcaccagcgcaccgtggcgcgactccttcgagtttgaccgattcgatgttcgctacctc
aaggtaaaagattccgccgagaagttcgccgtcattcagttcggtgtatccccctttcgc
tgggacccactcaagcagtccttcatcacccatccacacaatttctttatatttcaacgt
caagaacttccacttgatggtgctgcttatgaattcctttgtcagacaacatcaatggat
ttcttggccaaataccagtttgatttcaatgcctgcattcatgaaggtgtatcttattta
tccagagaacaagaagataaagctcttaaacatgtgaattcaacatataaggatgagtca
ttggattcatggcatagtctaaaggaaattagagatactcatttgttcaacatacctgat
atcctctttgccgaaagaatgaaggacagattgagtgaatggcttggtggattgttgcgg
aatagagatgaaggttctgaagttcaaccaagttttaatgactcgaagcagcagtttgaa
accattttcttcaagatgcgtcctgctattagtctgaatggtttcacttctcatcaactt
cggttgattcaattggttgtaagaaagcatttcaaagatcttgcttatcttcgtgtcagt
ggggaaaattcttgttcacaaaacgttatagtgtatatagagtcagaaagtgtcaaaaag
atgctgatgaaagaagtgaaggatgaacaaaaaatagatgcagagatgagcatcaaagct
tctattggatttcgccatgttattgacttgctttcctcagagaagaagttgattgttggt
cacaattgcttccttgatattgcacatatttacagcaaattctttggtcctcttcctttg
actgctgaagaattcatttcctctgttaacaaatactttccgcacatcattgataccaaa
atattgttgaattcaaattctattcttcaacaaaggatgaagaaatctagcacttcattg
tccaaggcattttctgttttgtgtccacaaattgctcttggctctaaaagcactcatctg
tctcttcagccgtctgtgaaagtagaggttgaagtggatgatataaggtcatccaactgg
aactctggagtgaagcatgaagctggatatgatgcttttatgactgggtgcgtctttgcc
caagcatgcagtcaccttggtattgattttaaacaacagtcatcctctgaaaatttagct
cacaatgaaaagctccgggaacacgtcaaccttctgtatctcagttggactaatggagag
attatcaatctaagcactggaaataggacttctgagtctttggcctctaataagcgcaaa
aaccactacccaaagattttatttgagtgtattgttatagtatggggattcccatctcac
ctcaaggcttgggacattagagaatgcatctccaaagtctatggccctacctcagtgatt
tcagtctatcatgtggatgaaaccgcagttttcgtgcagttcagcagggcagaaatggtt
tccaaatttcttgatttgaaggaaagcttagatagaaataacgatccaatctcggttttg
catcctcttgcaaaattgctcgaaggtggaaatacctgtgctgctagctatgaaacttac
aaagaaatatgtagttcaactgtctcaaaagtcttatttgcggatcaagcaaaggcagtt
ggtatcaaatggaagaccaagttggtggaatcctcggataagaccaaagaacatgaaagt
ctccgtaaagtaaaagcagtgaattctgatccaagttgtggtgaaagaactaagaataag
aattttgatgatgtatcaaatgattcatcatacagccaattatcatctgatgagatcatt
gattccttttatacgcgggaggcaaagcagatttga
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