KEGG   Citrus sinensis (Valencia orange): 102630388
Entry
102630388         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102630388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102630388
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102630388
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102630388
  mRNA degradation factors
   3'-5' decay
    Ski complex
     102630388
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C Ski2_N DEXQc_Suv3 ResIII Fib_succ_major
Other DBs
NCBI-GeneID: 102630388
NCBI-ProteinID: XP_006488464
LinkDB
Position
8:complement(join(29644593..29644805,29644892..29645018,29645563..29645801,29645893..29646107,29646763..29647210,29647609..29647756,29647977..29648086,29648936..29649193,29649747..29649800,29650011..29650121,29650201..29650356,29651024..29651411,29651591..29651658,29652613..29652723,29652875..29653075,29653240..29653341,29654027..29654134,29654260..29654429,29655425..29655500,29655627..29655701,29655827..29656087,29656194..29656442,29657196..29657333))
AA seq 1341 aa
MNRIQATNELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKE
HIEDKYLSMGLDTNEFSPEKVGRQWDFDWFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQ
GKWEPNSVQVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGGLEDSQSLERIL
PDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQNSLKSTSDEK
LNELSVQFDDLFKKAWEEDVAEFEKDGPQLEPESIDSDAEGKTTVGFNSVKEADLSVLDE
ILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEA
IYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFD
VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEE
VIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYK
VCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKH
SGMQNSGNFSGSGWNQKNGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHC
DKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGL
LPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ
MAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEE
LKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKY
NNQITEAFMQSAHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSA
SETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEV
RGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLK
LKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHIKLAKENKRHKDEVNTLKFQMSDEAL
QQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEA
VAIMSAFVFQQRNTSEPSLTPKLSMAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKF
GLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKME
TASNAIKRDIVFAASLYITGV
NT seq 4026 nt   +upstreamnt  +downstreamnt
atgaacaggatccaagccacgaacgagctcgcttttcgggtcggattctccggccacagc
ggccatctcagagtcgagccgctctacaccgtcgaagaccgcactgatcccataaaatct
ctccccgattttatccttccacctgcgtttcctagggagacggctgaatcaataaaggag
catatagaggataaatatctatcaatgggattggacaccaatgaattttcgccagaaaag
gttggaaggcagtgggattttgattggtttgaaatggcaaaggttcccctagagccatcc
ttggcgcagtctgttgtggctccagtgtgggaagtaccattcagacgacaaacaaaacaa
gggaaatgggaacccaattcggtgcaggtggacgtatcagaactgatgctaggagctcaa
gattcgggtcctctgccacgtgtggctggaccggcaaaagattttgtaagaggaagcatc
aatagccgtccatttcgtcctggaggtttagaggattcccaatccttagagaggattctt
cctgatggtgcttctaatggtgaatgggtgcaagaaattttgaaaggtggtcctgctcag
gttgttcctccaagctttaagcaaggattagaccttggtgagctacaggcatatccttgt
ttgtggaacgtctacaaagatcaggaccagaattctctcaaaagcacgtcagatgaaaag
ttgaatgagttgtctgtacagtttgatgatttattcaagaaagcttgggaagaggatgtt
gcagagtttgagaaagatggtcctcagttggaaccagagtctattgattcagatgctgaa
ggaaaaacaactgttgggttcaacagtgtgaaagaggctgatctatctgtattagatgag
atattatcagttaaatcaggaggaacaacatcaatattggatgatggtggtggacagcag
cagaaggaggcatgggttgttagtggaagtactgaagcaattgcagatcgctttcatgaa
cttgttcctgacttggcacttgattttccttttgagttagataacttccaaaaggaggct
atctattatctggaaaatggggattctgtttttgttgctgctcatacttcagctgggaag
actgttgttgcagaatatgcattcgctttggcaacaaaacactgtacaagggctgtatat
actgctcccatcaaaaccatcagcaaccaaaagtatagggatttttctgggaaattcgat
gttggcctcctcactggtgatgttagcttgaggccagaggcttcttgtctcatcatgacc
accgaaatattaaggtcaatgctttaccgaggtgctgatattatacgtgatattgaatgg
gtcatatttgatgaagtgcactatgtcaatgatattgaaagaggtgttgtttgggaagaa
gttataattatgctcccaaggcatatcaatattgtcctcctttctgccacggtaccgaac
acagttgaattcgctgattggattggtcgaacaaagcaaaagaaaattcgcgttactggc
actacgaaaagacctgttcctctggagcactgcctatactactctggagagttctataaa
gtatgtgaaaatgaagcttttatacctcaagggtggaaagctgctaaagatgcatacaaa
agaaagaacttaagtgcagctagtggtgctaccggatcatatgctggagcttcatcacct
cgtgatggggctcgggctcagaaacgtgaacatcctaatcgtggtaaacagaacaagcat
tctggtatgcagaattcagggaatttctctggaagtggttggaatcaaaaaaatggtggt
agccagaacaattgggggttacggagatcagaagtgtctatctggttgacattaataaac
aagctctcaaagaaatcactattaccagtggttatattttgtttctcaaagaatcattgc
gataaattagctgatggtatgtctggaattgatctcactagtagttctgagaaaagcgag
atacgagttttttgtgacaaagcattttcacggttaaagggctctgatagaaatttacca
cagattgtccgagtgcaaagccttcttcgtcggggaattgccatccatcatgcagggttg
cttcccattgttaaagaagttattgaaatgcttttttgtcgaggtgtggttaaggttttg
ttttcaacagagacatttgcaatgggggttaatgctccagctagaacggtcgtttttgat
aatttaaggaagttcgatggcagggaatttaggcaattacttcctggggaatacactcaa
atggcaggtcgtgctggtagaagaggacttgataaaattggtacagttgttgtactgtgc
cgtgatgaaatcccgggagagagcgatttgaaacacattatagttggaagtgcaaccagg
ctggagtctcagtttcgactgacatatattatgatccttcatcttcttcgtgttgaagaa
ctgaaggtggaggacatgctgaaaagaagttttgctgaattccattctcagaaaaaactt
ccagaacagcaacaacttttgatgcgaaaacttgctcagccaccaaaaaccattgaatgt
attaagggtgaaccagcaatcgaggaatactatgacatgtactacgaagcagagaagtat
aacaaccagataactgaggcgttcatgcagtctgcccaccaatttctaatgcctggaagg
gtgttatttgtgaaatcccagacaggccaggatcacttgctgggagctgttgtgaaagca
ccttctgctaataataaagagtacattgtaatgttgctgaaacctgatttaccatcagct
tcagaaacttccttggataagaaaagtggggacttctcagaaggctattttgtgatacca
aaatcaaaacgtggtcttgaggaagagtattgtggttctgtttctcaccgtaaaggctca
ggtgttatcaacataaagttaccttaccatggtgctgctgctggagtgagttatgaggtc
agaggaattgataaaaaagagctattatgcatatgcaattgcaagataaagattgatcaa
gttgggcttctcgaagatgtcagcagtgctgctttttcaaagacagttcagcagcttttg
gttttgaaatctgatgaaaaaaaatatcctcaagcccttgatccagtgaaagatttgaag
ctgaaagacatgaatctagtggaagcatactacaaatgggctggcctattgcgaaagatg
gcagcaaacaaatgtcatggttgtataaaattggaggagcacatcaagttagccaaagag
aataagaggcacaaagatgaagttaatactctaaaatttcaaatgtctgatgaagcactt
caacaaatgccagattttcagggccggatagatgttctgaaggaaattggttgtatagat
gctgatcttgtagttcaaattaaaggccgcgttgcttgtgagatgaactcaggggaggag
ttaatatgcaccgagtgtttatttgagaatcaactcgatgacctggaaccagaagaggca
gttgctataatgtctgcatttgtgttccagcagaggaatacttccgaaccttctcttact
cctaaactttctatggctaaagaaagattgtacaatacagctattagacttggagagctt
caagcccatttcaaagtacagatagatcccgaggagtatgcccgtgacaatctcaagttt
ggtcttgttgaagtggtttatgaatgggcaaagggcactccattcgcagatatctgtgag
ctgactgatgtacctgaaggcctgatagtgcggaccattgtcagattggatgaaacatgc
cgtgaatttagaaatgctgcggctattatgggtaactctgccctgtacaagaagatggaa
actgcttccaatgcaataaagcgcgacattgtttttgcggccagcttgtacattactgga
gtatag

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