KEGG   Citrus sinensis (Valencia orange): 102630495
Entry
102630495         CDS       T02983                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03040  Spliceosome
cit04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102630495
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102630495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cit03041]
    102630495
   04121 Ubiquitin system [BR:cit04121]
    102630495
   03400 DNA repair and recombination proteins [BR:cit03400]
    102630495
Enzymes [BR:cit01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102630495
Spliceosome [BR:cit03041]
 Complex B
  Other components
   Prp19 complex
    102630495
 Complex C
   Prp19-CDC5 complex
    102630495
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  U-box type E3
   102630495
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    102630495
SSDB
Motif
Pfam: WD40_Prp19 WD40 Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 WD40_like Beta-prop_DCAF12 U-box Beta-prop_RIG_2nd Beta-prop_DCAF4 PROPPIN zf-Nse PAS_11 KNTC1_N PUMA_CC B-prop_COPA_B_2nd V_ATPase_I_N TPR_MLP1_2
Other DBs
NCBI-GeneID: 102630495
NCBI-ProteinID: XP_006489640
UniProt: A0A067DK27
LinkDB
Position
1:complement(join(17901015..17901130,17901228..17901298,17901601..17901652,17901978..17902074,17902157..17902234,17902316..17902441,17902990..17903094,17903431..17903505,17904377..17904436,17904554..17904649,17905741..17905857,17906081..17906202,17906295..17906439,17906826..17906912,17907565..17907627,17907748..17907819,17908138..17908223,17908321..17908333))
AA seq 526 aa
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK
PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE
LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT
GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY
DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY
TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD
GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK
TFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSES
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgaattgctcaatctccggcgaggtgccggaagagcctgtcgtttcgaagaactcaggt
ttactcttcgagaagcgcttaatcgagagacacatattggattatggaaaatgtccggtt
acaggggaaccacttactatggatgacattgttccaatcaaaacaggcaagattgtgaag
cccagaccattgacagctgctagcattcctgggatgcttggaatgttccagaatgaatgg
gatggtttgatgctatccaattttgctttggagcaacaacttcatacggcaaggcaagag
ctaagtcatgcattgtaccagcatgatgctgcttgtcgtgtgattgctagacttaaaaag
gaaagggatgaagcaaggtcattacttgcgcaatctgaaagacagataatgcctgcagaa
tcaactgcagttacatctaatgctgctcttagcaatgggaaaagagcccctgaggatgag
gatttgggccctgctggaaagaaattacatactggaattactcctgctattattgctgag
ctgacagactgtaatgcggctctttcacagcagcggaaaaagcggcaggttcctccagct
ttggctcccattgatgctttggagaggtatactcagcttgctagtcatcctcttcacaaa
actagcaaacctggcattgtttctctcgatatccattactccaaggatgtcattgcaacc
ggaggagttgataccaatgctgtactttttgatcgaccatcaggacagatcgtcactacc
ctgagtggtcactcaaagaaggttacaagcgttaaatttgtcacagaaggtgatctattc
ttaacaggctcggctgataagactgttcgtgtgtggcaaggatctgaagatggaaattat
gattgtaagcacactttgaaggatcatactgctgaggtgcaagctgtcacagtccatgcc
acgaacaaatactttgtgactgcttctctggataatacatggtgcttttacgatctttct
tctggtatatgcctgacacaggtttcagatgctggaaccgacggtagacctgaaggttat
acatctgcagcttttcatcctgatggtctcatccttggaacgggcacctcagaagctctt
gttaagatttgggatgtgaaaagtcaggcgaatgtggcgaaatttgatggacatgttgga
gcagttacagccatatccttttcagaaaatggttactaccttgcgacggcagcccatgat
ggtgtgaagctgtgggacctgcgtaaattgaagaacttccggtcatttgaatcttctgat
tctgagacgcctaccaactcagtggatttcgaccatagtggatcttacctcgcagttgca
agtgcagatataagagtctaccaagtggccagcgttaaagctgattggaattgtatcaaa
acttttcctgatttatcaggcacaggtaaggcaacttgtgtgaaatttggtccagatgcg
aaatacattgctgtgggatcaatggaccgcaatctacgtgtatttggtctgcctggcaat
gatgctccatcagaatcatag

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