KEGG   Citrus sinensis (Valencia orange): 102630724
Entry
102630724         CDS       T02983                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102630724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102630724
   03009 Ribosome biogenesis [BR:cit03009]
    102630724
   04131 Membrane trafficking [BR:cit04131]
    102630724
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cit04147]
    102630724
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     102630724
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    102630724
Membrane trafficking [BR:cit04131]
 SNARE
  SNARE associated proteins
   Others
    102630724
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102630724
Exosome [BR:cit04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   102630724
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_5 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase AAA_17 nSTAND3 AAA_28 Mg_chelatase ATPase_2 AAA_18 Parvo_NS1 nSTAND_NTPase5 ABC_tran NB-ARC AAA_lid_PRS2_C Viral_helicase1 AAA_7 NACHT Vps4_C TsaE IstB_IS21 DUF815 Zeta_toxin AAA_24 Zot
Other DBs
NCBI-GeneID: 102630724
NCBI-ProteinID: XP_006493028
LinkDB
Position
6:join(9722672..9722700,9722800..9722965,9723186..9723414,9724360..9725126,9725258..9725479,9725569..9725640,9725729..9726010,9726389..9726748,9726858..9727154)
AA seq 807 aa
MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGD
TILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD
AAPPGADGGSDPFASSAGGAEDDDLYS
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgtctaatcaagctgaatcctctgatgctaaggggacgaagagggactttagtacggcc
attttggagcgaaagaaggcaccgaatcgtctcgttgttgatgaagctattaacgatgat
aactctgtcgttgttcttcatcccgataccatggagaagctccaattcttccgcggtgac
acgatcctcatcaagggaaagaaaaggaaagataccgtttgtattgcccttgccgacgat
acatgtgaggaaccgaagataagaatgaataaggtcgtgaggtcgaacttgagggttaga
ctcggagatgttgtttctgtgcaccagtgcgctgatgtcaaatacggaaagcgtgtgcac
atattacctgtggatgacacaattgaaggggttactggaaatctctttgatgcatacttg
aaaccttatttcacggaagcttatcgaccagtgaggaagggtgatctattccttgttaga
ggtggaatgagaagtgtagagttcaaggttattgagactgaccctcctgaatactgtgtg
gttgcccctgatactgagatcttctgtgagggagagccagtgagaagggaagatgagaat
cgattagatgaggttggctatgatgatgttggtggggttagaaagcagatggctcagatt
cgagaattagtagaacttccattaaggcacccgcagctctttaagtcaattggtgtgaag
ccaccgaaaggaattttgctttatggacctcctggatctgggaagacactgattgcccgt
gccgttgcaaatgaaaccggtgctttcttcttttgtataaatggacctgagatcatgtca
aaattggctggtgagagtgaaagcaatcttaggaaagcatttgaggaagcagagaaaaat
gcaccatcaattatttttattgatgagatagattcaattgctcctaaacgtgagaagact
catggagaagttgagaggagaattgtttcccagcttttgacactcatggatgggctgaaa
tcacgtgctcatgtgattgttattggggctacaaatcgtcccaacagcattgacccagct
ttgagaaggtttggtagatttgatagggaaattgacataggtgtgccagatgaagttggg
cgtcttgaggttctccgtattcacacaaagaatatgaagctttctgatgatgttgacttg
gaaagaattgcaaaagacacacatggttatgttggtgctgatctagcagctctgtgtact
gaggctgcacttcagtgcatcagggagaagatggatgtgattgacttagaagatgaaacc
atagatgctgagatactcaattctatggcagtgacagatgaacattttaagactgctctt
ggaacaagcaatccatctgctctgcgtgaaactgttgtggaagttcccaatgtcaactgg
gaggatatcggtggccttgagaatgttaagagagagcttcaagagactgttcaatatcca
gtggagcatcctgagaaatttgagaagtttggcatgtccccatcaaagggagtgcttttc
tatggtcctcctggatgtgggaaaacccttctggccaaagctattgccaatgagtgtcag
gcaaatttcattagtgtcaagggtcctgagttgcttacaatgtggtttggagagagtgaa
gccaatgtacgagaaattttcgacaaggcccgtcaatcagctccctgcgttctatttttt
gatgaacttgattcgattgctacccagagaggaagcagtgttggagatgctggaggtgct
gctgatagggttttgaaccagcttctgacagagatggatggcatgtccgcaaagaaaact
gtcttcattattggagccaccaaccgaccagatatcatagatcctgcccttctccgtcca
ggccgtcttgaccagttgatttatatccctctccctgatgaggaatctcgccttcaaatt
ttcaaggcttgcttgaggaaatcaccggtgtccaaagatgttgacctcagagctcttgct
aagtacacccaaggctttagtggtgcagatattactgaaatatgccagcgggcttgcaaa
tatgccatccgagagaatatcgagaaagatattgagagggagaggaggagaagtgagaac
ccagaggcaatggaggaggatgtagaggatgaagtggctgagattaaagctgtgcatttc
gaggaatcaatgaagtatgctcgtagaagtgtcagtgatgctgacatacgcaaataccaa
gcatttgctcaaacattgcagcagtcaagagggtttggaagtgaatttaggtttcctgat
gctgctccccctggtgctgatggcggatcagatccttttgcgtcttctgcaggtggcgca
gaagacgacgatctttacagttag

DBGET integrated database retrieval system