KEGG   Citrus sinensis (Valencia orange): 102631340
Entry
102631340         CDS       T02983                                 
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X2
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
cit  Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:cit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cit04121]
    102631340
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102631340
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 102631340
NCBI-ProteinID: XP_024951632
LinkDB
Position
5:join(31448207..31448278,31449293..31449361,31449512..31449589,31449730..31449864,31449968..31450075,31450178..31450306,31450586..31450701,31450789..31450906,31451240..31451345,31451686..31451831,31452003..31452173,31452267..31452377,31453056..31453167,31454275..31454627,31455565..31455655,31455778..31455873,31455968..31456038,31456112..31456239,31456472..31456553)
AA seq 763 aa
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS
KGSLLISGSDDTRINVWSYSSRKLLHSIDTGHSANVFCTKFVPETSDELVVSGAGDAEVR
LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG
SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA
RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL
GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK
NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK
VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED
SDYDEEVEVDFRTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS
QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR
LIKMLLGDEAVVNCVQCHPFDCVVATSGIDSTIKIWTPSASVPSIVSGGAAGPDTADVLE
AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
NT seq 2292 nt   +upstreamnt  +downstreamnt
atggagaattttccttttcacgatggcagtatttatgatatgcttgacaccagacacacc
gacactcgccccgatgtcaatcacagtttgcaaatgcactcgtctttggtacggaggctt
tctcaagaaagagaattggaggggcatcagggttgtgtgaatgccatttcttggaactcc
aaaggctctcttttgatatctggatcagacgacacacgtatcaatgtttggagctattct
agtagaaaacttttgcattccatagataccgggcattctgcaaacgtattctgtactaaa
tttgtccctgaaacttcggatgagcttgttgtctctggagctggagatgcagaagtccgg
ttatttaatctgtctcgctttagtgggagaggacttgatgataatgctattactccatcg
gcactgtatcagtgtcataccagaagagtaaaaaagttagctgttgaagttggaaatcca
catgtggtctggagtgcaagtgaagacgggactttgaggcagcatgattttcgacagggt
tcttcttgtcctcctgccggatcttctcatcaagaatgtcgtaatattctacttgattta
cggtgtggagcaaagaggtcgctagctgatccccctaaacaaactctttctctaaaatct
tgtgatatcagttctacgaggcctcatttactcctggttggtggaagtgatgcatttgct
cgtctgtatgatagaaggatgctgcctccactaacttcctgtcagaaaaggatgtcacca
ccaccttgtgttaactatttctgccctatgcatctttctgaacatggacgctcaagcttg
cacctgactcatgttacatttagtcccaatggcgaagaggttctccttagttatagtgga
gagcatgtatatctaatggatgtaaatcatgctggtgggcgtgccatgcgatatactgta
ggagacgcttcaaaaattatgagctttacaccaacactcaatgggttagaattgcagcca
ccaatacatgattttctccaaaccaatattcgtgtcaggggggaagtggccacagggctt
ggaaagtgcagaatgttagttgaaattgctagaaattcattggaagaggggaaacatcct
tattatggaattgaggcatgcaatgaagttttggaggggcatctcagtggcattggaccc
atgctgaggcatgaatgtctttgcatacgtgccgccttgttgcttaagcgcaagtggaaa
aatgatgcccaaatggccataagagattgttacaatgctcggcggattgacagttcttcc
tttagagctcacctctacatgtctgaagctctagagcagctttgcaaatataaggaagct
ttagattttgccatagccgcccaatgtctggacccatccaattctgtgatggcagaaaag
gtcgaaaatataaagaagcatattgctgcagccgaaacagagaaaaataataaggcaaat
gatggaggagcaaggtccgaacctcgaactggaagagtactttcactgagtgatataatc
taccggtcagaggctaatagcgatgcttcacaagatggtccaagatctgaaagggaagat
tctgactatgatgaggaggtggaggtggattttcgtacatctgtaccaggtgatgaaggg
cgtgacgtagaagccaattttctgcatggaagtttgaatgtgagaatccaccgaagaggt
gattcagctagagaaactgtcgatgcaaatggttcctctggatcgccttcgtcttcctca
caaaatgataggattccttatcagcctgagacagttattgacatgaagcaaagatacgtt
ggccattgtaatgttgggactgacattaagcaagctagttttcttggtcaaagaggtgat
tatatagctagtgggagtgatgatggtagatggtttatttgggaaaagcaaacaggtaga
ctgattaaaatgctccttggagatgaagctgttgtgaactgcgtgcagtgtcatcccttt
gattgtgtggtggcaaccagtggcattgatagcacaataaagatatggactccaagtgct
tctgttccatcaattgtttctggaggagcagcaggaccggatacagcagatgtattggaa
gccatggaaagcaatcaaaggaaattatcccgtaatcgtgaacacagcttgtcctatgaa
cttctggagcggtttcacatgcatgagttttctgaagggtctctgcgtccatttgagtgt
gctcagagctaa

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