Citrus sinensis (Valencia orange): 107177580
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Entry
107177580 CDS
T02983
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit00040
Pentose and glucuronate interconversions
cit01100
Metabolic pathways
Module
cit_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107177580
Enzymes [BR:
cit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107177580
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
107177580
NCBI-ProteinID:
XP_015387071
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All DBs
Position
6:join(25043731..25044026,25044153..25044261,25044382..25044495,25044924..25045169)
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AA seq
254 aa
AA seq
DB search
MQGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIIAPGNSPNTDGIHIQHSS
NVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNV
SFTETQNGVRIKTWQGGKGYARHIVFENIIFQGSHNPIVIDQYYCPHKHCKNKTLAVKIS
DVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKHEKKTSSYCSNVRGTADPG
VFPKVSCLQVDENV
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgcagggtctagtcgtagcaaattccaacaatgtgcatattgatgacctaacctttgag
gacagcccacaaatgcacattgcttttgaaagatcgaccaacattgaagccaccaatctc
accatcattgcccctggcaacagtcccaacaccgatggaattcacatccaacattcctca
aatgtctccattgctcactccatcatcagtaccggcgatgactgcgtttcgatcggcgac
ggttcttcccatcttaacatcacaaatattttttgtggccctgggcatgggattagcatt
gggagcttgggtatgaagggaaggaacgagaaggttgaatttgttcatgtaaacaatgtt
tcatttacagaaacacaaaatggagttagaatcaagacatggcagggagggaaaggatac
gcaagacacatagtatttgaaaacataatatttcagggttcacataatccaatcgttatc
gatcaatattattgccctcataaacattgcaaaaacaagacgttagcagtgaaaatcagt
gatgtcacatataatcatattctcgggacatcaaacggagaaactgcagtggcattttca
tgtagcacatcaacgccatgcaagaatattattatgaaggacatacatttagggcacgtt
aaacatgaaaagaagacatcatcatattgttcaaatgtgagaggaactgcagatcccgga
gtcttcccaaaagtttcttgtttacaagtagatgagaatgtgtga
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