Citrus sinensis (Valencia orange): 127901135
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Entry
127901135 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127901135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
127901135
03036 Chromosome and associated proteins [BR:
cit03036
]
127901135
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127901135
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127901135
mRNA degradation factors
5'-3' decay
Decapping complex
127901135
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127901135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
FTZ
Motif
Other DBs
NCBI-GeneID:
127901135
NCBI-ProteinID:
XP_052293496
LinkDB
All DBs
Position
3:complement(join(49087402..49087480,49087623..49087696,49087786..49087874,49088291..49088471,49088564..49088815,49089335..49089573,49090092..49090326,49091343..49091403,49091621..49091895))
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AA seq
494 aa
AA seq
DB search
MNNSRGRYPPGIGSGRGGVNASNPSFQSSRPQQQYVQRNFLQNHYHNQQFQQQQQQQQQQ
QWLRRNNFPGADSSIVDEVEKTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGN
EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS
ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPHIDQAIYCR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagtagagggaggtatccaccggggatcggcagcggccgcggcggcgttaac
gcgtctaaccctagctttcagtcgagccgccctcagcaacagtacgtgcagcggaatttt
cttcagaaccattaccacaaccagcaatttcagcagcagcagcaacaacaacaacagcag
cagtggctacggcggaacaattttcctggcgctgattcctccattgttgatgaggtcgag
aagaccgtacagtccgaagctgccgtcgacccgagttcccaagattggaaggcacggcta
aagataccacccgctgatacacgctacagaactgaggatgttacggccacaaaaggaaat
gaatttgaggactattttcttaaacgtgagctacttatgggaatatttgaaaaagggttt
gaaaggccatcacctattcaggaagaaagtattcctattgctttaacgggtagcgatatt
cttgccagagctaagaatggtaccgggaagacagctgccttctgcattccagcattggaa
aagattgaccaagataacaatgtgattcaagttgttatccttgttccaacaagagagttg
gctcttcagacatcccaagtctgtaaggagctggggaagcatttgaatattcaagtcatg
gttaccactggtggaaccagtcttaaggatgatattatgcgtttgtatcaacctgttcat
ttgcttgttggaactcctggaagaatactagatctttctaagaagggtgtttgcattttg
aaagattgttcaatgcttgttatggatgaggctgataagcttttgtcaccagagttccaa
ccttcagtagagcagcttattcgttttcttcctgcaaatcgtcaaattttaatgttttca
gctactttccctgttaccgtcaaggactttaaagataaatacctacaaaaaccatatgtt
attaatctgatggatgagcttactctcaagggaattacccaatactatgcttttgttgaa
gaaaggcagaaagtccactgcctcaacacacttttctctaagttgcaaattaatcaatct
atcattttctgcaattcggtgaatcgggttgaactccttgccaagaaaattacagaactt
gggtactcttgtttttatatccatgcaaagatgctgcaagaccatcgcaacagagtattt
catgacttccgcaatggtgcatgcaggaatcttgtttgtactgacctatttacgaggggt
atagacattcaagcagtgaatgttgtcattaactttgattttcctaagaactcggagaca
tatctgcacagagttggtcgatctggaaggtttggacaccttggattagctgtgaatttg
attacttacgaggaccgcttcaacttgtataggattgagcaagaactcgggactgaaatt
aagcagatacctccgcatattgatcaggcaatttactgcaggtga
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