Citrobacter sp. LUTT5: GUC46_11010
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Entry
GUC46_11010 CDS
T10487
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
citr Citrobacter sp. LUTT5
Pathway
citr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
citr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GUC46_11010 (pdeR)
Enzymes [BR:
citr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
GUC46_11010 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_8
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QHI82808
LinkDB
All DBs
Position
complement(2298826..2300817)
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AA seq
663 aa
AA seq
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MKDVRELITLYSYVGTNNPYWRLSEDCNILHFSVEETSEADQTIELSPEQAERIREMTVI
TSSLLMTLPIEDDNIPVHLVGRKINKREWAGSASAWDDTPSVARDLAHGLSFAEQVVSEA
NSVIVILDRMGNIQRFNRLCEEYTGLKEREVIGQSVFTLFMSRREAAASRRNIEVFFREG
NSYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFLICSGTDITEERRAQERLRVLANTD
SITGLPNRNAIHNLISNAIENAGDTQVGIVYLDLDNFKKVNDAYGHMFGDQLLQSVSLAI
LSCLSENQLLARFGGDEFIVLATETSQGSLEATASRILTRLRQPFRIGLIEIYTGCSIGI
SLAPQHGQDCESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQIAKWRAKGINLRVAVNVSARQLADQTLFTDLKQVLHELDFEYCPIDVELTESSLIENE
QLALSVIQQFSQMGAQIHLDDFGTGYSSLSQLARFPLDAIKLDQTFVRDVHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAAAFERWYRRHLNK
KTR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtccgggagctgattacgttgtatagctatgttggcaccaataacccttac
tggcgtttgtcagaggattgcaacatcctgcatttctctgtcgaagaaacgtcagaggcc
gatcagaccatcgaattatccccggaacaagccgaacgcattcgcgagatgacggtaatt
acgtcaagtttattaatgacgttaccgattgaagatgacaacattcccgtgcatctggtc
ggccgaaaaatcaataagcgtgaatgggccggtagcgcatccgcctgggatgacacccct
tccgtcgcccgtgacctggctcatggcctctcttttgccgaacaggtggtttctgaagcc
aattcagtcattgtcattcttgatcgcatgggcaacattcagcggtttaatcgactgtgc
gaagagtataccggactcaaagaacgtgaagtcattggccaaagtgtattcacattattt
atgagtcgacgtgaagctgccgcgtcacgacgcaatatcgaggtcttttttcgcgaaggt
aactcatatgaagttgaacgctgggtgaagacctgcaaaggacagcgtctgtttttattt
cgtaataaatttgtgcataacggtagcggcaagaacgaaatatttctgatctgttccggg
accgatatcactgaagaacgccgcgcccaggagcgtttgcgggtgttggcgaatactgac
tcgatcactggattacccaatcgcaacgctattcataatctgatcagcaatgcgattgag
aacgcgggcgatacgcaggtcgggattgtgtacctcgatctggataacttcaaaaaggta
aacgatgcctacgggcatatgtttggcgatcagctattgcaaagcgtatcgctggcaata
ctcagttgccttagcgaaaaccagttactggcacggtttggcggcgatgagtttattgtc
cttgccaccgaaacatcccagggttcactggaagccaccgcgtcgcgtattctgacacgc
ctgcgtcaaccttttcgcatcggcctgattgaaatctataccggatgctctattggtatt
tccctcgccccacaacatggtcaggactgcgagagcgtcattcgtaacgccgatacggcc
atgtacaccgcaaaagaaggtggccgtggacagttttgtgttttctctccggaaatgaat
cagcgggtatttgaatatctgtggctggatactaatctgcgcaaagcgctggaaaacgat
caactggttatccattatcagccaaagataacctggcgaggcgaagtgcgcagcctggag
gcgctggttcgctggcagtctccggaacgaggcctcattccaccactggaatttatctcc
tacgccgaagaatcagggcttatcgttcctctgggtcgctgggttattctggacgttgtg
cgtcagatagcaaaatggcgcgcaaagggaatcaatctgcgcgtggcggtaaacgtttct
gcccggcagctcgccgatcagacgctatttaccgatctcaagcaggtgcttcatgaactc
gactttgaatattgccccatcgatgtcgagttaacggaaagcagtttaattgaaaatgag
cagttggcactgtccgtcattcagcagtttagccagatgggggcgcaaatccatttggat
gattttggtaccggttattcgtcactgtctcaactggctcggttcccgcttgatgcaatt
aaactggatcaaacctttgtcagggatgtacacaaacaacctgtttcgcagtcgctggta
cgtgccattgttgcggtcgcacaggcactcaacctgcaggtcatcgccgaaggtgttgaa
agcgcgaaagaggatgcgtttttaaccaaaaatggcgtcaacgagcgtcagggttttttg
tttgccaaaccaatgccagccgccgcgtttgagcgttggtatcgacggcacctcaataaa
aaaacacgctaa
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