Citrobacter sp. LUTT5: GUC46_22600
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Entry
GUC46_22600 CDS
T10487
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
citr Citrobacter sp. LUTT5
Pathway
citr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
citr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GUC46_22600 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
citr03021
]
GUC46_22600 (rpoB)
03400 DNA repair and recombination proteins [BR:
citr03400
]
GUC46_22600 (rpoB)
Enzymes [BR:
citr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GUC46_22600 (rpoB)
Transcription machinery [BR:
citr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GUC46_22600 (rpoB)
DNA repair and recombination proteins [BR:
citr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GUC46_22600 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QHI84948
LinkDB
All DBs
Position
complement(4753086..4757114)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtgttggacataccttatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagcagctttccgttccgttttcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgactgacaacggtacctttgtaatcaatggt
actgagcgtgttatcgtttctcagctgcaccgtagtcctggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcatcccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgtaaactgcctgcgaccattattctgcgtgcactgaactacaccactgagcagatc
cttgacctgttctttgaaaaagttgttttcgaaattcgcgacaacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcctcctttgacattgaagctaacggcaaa
gtctacgtcgaaaaaggccgtcgtatcactgcgcgccacattcgccaactggaaaaagac
gatatcaaacatatcgaagttccagttgaatacattgctggtaaagttgcggctaaagac
tacgttgacgaatctactggcgagttgatctgcgcagctaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcactaacgat
ctggaccacggtccgtacatttctgaaactgtacgcgtcgacccaaccaacgatcgtctg
agcgcactggtagaaatctaccgcatgatgcgtcctggtgagccgccgactcgtgaagct
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctatgacctgtctgcggtc
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttctgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgcactcggcccaggcggtctgacccgt
gaacgcgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtatgcacag
actaacgaatacggcttcctcgagactccgtaccgtaaagtgaccgacggtgttgtaact
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgtgatcaggttgactacatggacgtatccacccagcaagtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgcagttgctaaacgt
ggcggtactgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggcgagccggttgaacgtggt
gatgtgctggctgacggtccgtccaccgacctcggtgaactggcgctgggccagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcactaccatccacattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggccagaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggtgcggaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccaactgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgtg
ccaaacggtgtttccggtacgattatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagctggcctgttcagccgtatctacgctgtgctggtt
tccggtggtgttgaagctgagaagctcgacaaactgccgcgcgaccgctggttagaactc
ggcctgaccgacgaagaaaaacagaatcagctggaacaactggctgagcagtacgacgaa
ctgaaacacgaattcgagaaaaaactcgaagcgaaacgccgtaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggcggttaaacgtcggatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcaaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcttacgatctgggttcagatgttcgtcagaaagttgac
ctgaataccttcagtgatgaagaagttctgcgtctggctgaaaacctgaaaaaaggtatg
ccgatcgcaacgccggtattcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcacactgttcgacggtcgtaccggtgagcag
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tatggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtactaagatgtataaaaacatcgtggacggcaaccatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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