Citrobacter tructae: E4Z61_03210
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Entry
E4Z61_03210 CDS
T07250
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
citz
Citrobacter tructae
Pathway
citz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
citz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E4Z61_03210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
citz03400
]
E4Z61_03210
Enzymes [BR:
citz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E4Z61_03210
DNA repair and recombination proteins [BR:
citz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E4Z61_03210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBX79420
LinkDB
All DBs
Position
complement(549882..553328)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPAKAGDQRQLGELTGAACATLVADIAEHHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMSLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLESAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQTDTL
SRFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLPKKAANTNLGFQKLPD
LAVQAQQKAPLDALRKFLEAFTGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAVD
TGRYLMIGSAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTVEFAEKNHVNPVWLIGLLQKQPQRFRLDGPTRLKFIQDLADRKKRIEWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttatacgctcccggcaaaggctggcgatcagcgccagctaggt
gaacttaccggcgccgcctgcgccacgctggttgcagacattgccgaacaccacgcgggg
cccgtagtactcatcgcgccggacatgcaaaacgccctgcgcctgcatgacgaaattcgt
cagtttaccgaccagatggtgatgagcctcgcggactgggaaacgctcccttacgacagt
ttttctccgcatcaggaaatcatctcctcacggctctccacgttgtatcaactgccgtcc
atgcagcgtggcgtgctgatcgtaccggtcaacacgctgatgcagcgtgtgtgtccacac
agctatctgcacggtcacgcgctggtgatgaaaaaaggtcagcgtttatcacgtgacgcg
ctgcgtgagcaactggaaagtgccggttatcgccacgttgatcaggtcatggaacacggt
gaatatgccacgcgcggcgcgctgctggacctgttcccgatgggcagcgaactgccctac
cgtcttgatttctttgatgatgaaatcgacagtttgcgtttgtttgacaccgatacccaa
cgcacgctggaagaagtcgacgccattaatctgctgcctgcgcacgaattccccaccgat
aaaacggctatcgaactgttccgcagccagtggcgcgatacctttgaggtgaaacgcgac
gctgaacatatttatcagcaggtcagtaaaggtacgttgcctgccgggatcgaatactgg
cagccgctgtttttcagcgaaccgctgccgccgctgttcagctacttcccggccaatacg
ttgctggtgaataccggcgatttagagaccagcgccgagcgctttcagaccgatacgctg
tcacgcttcgaaaatcgtggcgttgacccaatgcgtccacttctgccaccggaatcactg
tggctgcgggtggatgagctgttctctgaacttaaacgctggccgcgcgttcagcttaaa
accgagagtctgccgaaaaaagcggcgaataccaacctgggcttccagaagctgccggac
ctcgctgtacaggcacagcaaaaagcaccgttggatgcattacgtaaattcctggaagcc
ttcaccggcccggtgattttctcggtagaaagtgaaggtcgccgcgaagcgctcggtgag
cttcttgcccggatcaagattgcaccgaagcgcattttacgcctcgacgaagcagtcgat
accgggcgttatctgatgattggttcggcggaacacgggttcatagatagcaaacggaat
ctggcgctgatctgcgaaagcgatctgctcggtgagcgcgtggcgcgccgtcgtcaggac
tcgcgccgcaccatcaatccggataccttaatccgcaacttggcggagctgcatcccggt
cagccggtcgtacatcttgagcacggcgtaggtcgctacgctggcatgaccacactggag
gccggtggcattacgggcgaatacctgatgctcacctatgccaacgacgccaaactgtat
gtgccggtgtcgtcattacatttgatcagccgctacgctggtggtgcagaagaaaacgcg
ccactgcataaactcggcggtgatgcttggtcgcgcgcgcggcaaaaagcggccgaaaaa
gtgcgcgatgtagcagcagaactgctggatatctacgcccagcgcgcggcgaaagaaggg
tttgcctttaagcacgatcgcgagcagtaccagctgttttgcgacagcttcccgtttgaa
accacgcccgatcaggcgcaggctattaacgcggtgctcagcgatatgtgtcagccgctg
gcgatggaccggctggtttgcggcgacgttggcttcggtaaaaccgaagtggctatgcgc
gccgccttcctcgccgtcgagaaccacaagcaggtcgccgtactggtaccgaccactctg
ctcgctcagcagcacttcgacaatttccgcgaccgctttgccaactggccagtacgcatt
gagatgttatctcgttttcggagcgccaaagagcaagcgcagatcctggagcaggtcgcc
gaaggtaaaatcgatattcttatcggtacccacaagctactgcaaagcgatgtgaagctt
aaagatctcggtctgctgattgtcgatgaagagcaccgcttcggcgtacgccataaagag
cgtatcaaggcgatgcgcgctgacgtcgatattctgacgctgacagcaacgccaattcca
cgtacgctgaatatggcaatgagcggtatgcgcgatctgtcgatcatcgcgactccgccc
gcccgtcgtctcgcggttaaaacctttgtgcgcgaatacgacaatctggtggtgcgtgag
gcgatcctgcgtgaagtgttgcgtggtggtcaggtctattacctgttcaacgacgttgag
aacatccagaaaaccgctgacagattagcggaactggtgccggaagcgcgtattgccatc
ggacacggccagatgcgcgagcgcgaactggaacgcgtgatgaacgatttccaccatcag
cgttttaacgtgctggtgtgtaccaccattatcgaaaccgggatcgacatcccgaccgct
aacacgattatcatcgaacgtgcagaccatttcggtctggcacagctacaccagctgcgc
ggtcgcgtgggacgctcgcatcaccaggcctacgcctggctgctgacgccgcacccgaaa
gccatgaccaccgatgcgcaaaaacgcctcgaagccatcgcttcgctggaagatttgggc
gcgggcttcgcgctggcaacccacgacctcgagattcgcggtgcgggcgagttgctggga
gaagaccagagcggttcaatggaaactatcggcttctcgctgtatatggagctgctggag
aacgcggtggacgcactcaaggaagggcgtgaaccgtcgctggaagatctcaccagtcaa
caaaccgaagtggaactacgcatgccctcactactgccggatgatttcattcccgatgtg
aacacgcggctgtcgttctataaacgtattgccagtgcgaagggcgaaaacgaactggaa
gagatcaaagtcgagctgatcgaccgctttggcctgctccccgatccggcccgtacgctg
ctggatattgctcgtttgcgccagcaggcgcagaaactggggatcaggaaactcgaaggc
aatgagaaaggcggtaccgttgagtttgctgagaaaaaccacgtcaacccggtatggctg
attggtttgctacaaaaacaaccgcagcgcttccgcctggacggtccaactcgcctgaag
ttcatccaggatctggccgatcgtaaaaagcgtatagagtgggtgcgtcagtttatgcgc
cagctggaagaaaacgccgtggcataa
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