Citrobacter tructae: E4Z61_05585
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Entry
E4Z61_05585 CDS
T07250
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
citz
Citrobacter tructae
Brite
KEGG Orthology (KO) [BR:
citz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
citz03019
]
E4Z61_05585 (hrpA)
Enzymes [BR:
citz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E4Z61_05585 (hrpA)
Messenger RNA biogenesis [BR:
citz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E4Z61_05585 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
DUF6145
PhoH
ResIII
SLFN-g3_helicase
NTPase_1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QBX79864
UniProt:
A0ABX5T097
LinkDB
All DBs
Position
complement(1050313..1054215)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFAMLQNQLESLMLRDRQRFSRRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPDITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRMLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVVSARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDRDDW
HWDQVPDHLKITFRVVDDKNKKLQEGRSLQGLKDLLKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWSGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDRLIDANGGPVWTEEGFAALHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaactcaccttcgctatgttgcagaaccagctggaatcgctgatg
ctgcgtgacaggcagcgtttttcccgccgcctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggctgccggtaaa
gttgtgctgcgtgaagcggcgcgaccggacattacctacccggaaaacttgcccgtcagc
cagaaaaaacaggacatcctggaagccattcgcgaccatcaggtggtgattgttgccggg
gaaacgggttccggtaaaaccactcagttgccgaaaatctgtatggaactgggacgcggg
gtgaaagggctgatcggccatacccagccgcgtcgtctggcagcgcgtaccgtggctaac
cgtatcgccgaagagttgcaaaccgagccgggcggctgcatcggctataaagtgcgtttt
agcgaccatgtgagtgataacaccatggttaagctgatgacggacggtatcttgctggcg
gaaatccagcaggatcggatgctgatgcagtacgacaccatcatcatcgatgaggcccac
gaacgcagcctgaacatcgactttctgctcggctatttgaaagagctgctaccgcgccgc
ccggatctgaaaatcatcatcacctcggcgaccatcgacccggagcgtttttcaaagcat
ttcaataacgcgccaattatcgaagtgtccggtcgaacgtatccggtggaagtgcgctat
cgcccgattgtggaagatgcggacgacaccgagcgtgaccagttgcaggccattttcgac
gcggtggatgaactggggcgtgaaagtcagggcgacattctgatcttcatgagcggtgag
cgcgaaattcgcgatacagccgatgcgctgaataagctggatttacgtcatacggaagtg
ttaccgctgtatgcgcgtctgtccaacagcgagcagaaccgcgtgttccagtcgcacagt
gggcgccgcattgtgctggcgaccaacgtggcggaaacctcactgacggttccggggatc
aaatacgtcattgatccgggtactgcgcgtatcagccgctacagctttcgcacaaaagtc
cagcgtttgccgatcgaaccggtgtcgcaggcgtcagccaaccagcgtaaaggtcgctgc
ggacgcgtatcggaagggatctgtattcgtctgtattccgaagacgacttcctgtcgcgc
ccggagtttaccgacccggaaattctacgtaccaacctggcgtccgttattctgcaaatg
accgcgctgggcctgggggatatcgcggcgttcccgtttgttgaagcgccggataaacgc
aatattcaggacggtgtgcgtctgctggaagagctgggtgcgatcaccaccgatgagcag
caaacagcttataagctaaccccgttaggccgtcagttgtcgcaactaccggtcgatcca
cgtttggcgcgcatggtgctggaagcgcagaaacatggctgcgtgcgtgaggcgatgatc
attacctcggcgctgtccattcaggatccgcgtgagcgcccgatggacaagcagcaagct
tccgacgaaaaacaccgtcgtttccacgacaaagagtccgatttccttgcgtttgtgaat
ctgtggaattatctcggcgagcagcaaaaagcgctatcgtcgaaccagttccgccgtcag
tgcaagctcgacttcctcaactatctgcgcgtgcgtgagtggcaggatatttacactcaa
ttgcgtcaggtggtgaaagagctcggtattccggtgaacagcgaacccgctgagtatcgg
gaaatccacgtcgcgctgctgaccggtttactgtcgcatatcgggatgaaagatgccgat
aagcaggagtttaccggcgcgcgtaacgcccgtttctcgatcttccccggttccggctta
ttcaaaaaaccgcctaaatggacgatggtggcagaactggtggaaaccagccgactgtgg
gggcgtattgccgcgcgtatcgatcctgagtgggtggagccggttgcccagcatctgatt
aaacgctcgtacagtgaacctcactgggagcgcgcgcagggcgcggtgatggcgacagaa
aaagtcaccgtctatggtctgccaattgtcgctgcccgtaaggtgaactacagccagatc
gatcctgcgctgtcgcgcgaactgtttatccgtcatgcactggtggaaggtgactggcag
acgcgccatgcgtttttccgcgacaacctgaagctgcgggcggaagtggaagagttagaa
cacaaatcacgccgccgcgatatccttgtcgacgatgaaacgttgtttgaattttacgat
cagcgtatcagccatgatgtggtttctgcccgtcattttgatagctggtggaaaaaggtc
agccgcgagacgccggatctgctcaactttgaaaagagcatgctcatcaaagagggcgcg
gagaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagttgcgg
ttgagctatcagtttgaacccggcgctgacgctgacggtgtgaccgtacatattccgctg
ccgctgttaaaccaggtcgaagaggccgggtttgaatggcaaataccggggttgcgtcgt
gaactggtgatcgccttgattaaatcactgccgaaaccagtgcggcgcaactttgtaccc
gcaccaaactacgcggaagcgtttttaggccgcgtgacaccgctggaactgccgttgctg
gactcgctggaacgtgaactcagacggatgaccggtgtgaccgttgaccgcgacgactgg
cactgggatcaggtgcccgatcatctgaaaatcacctttcgggtggtggacgataaaaac
aagaagctgcaggagggacgttcgctgcaggggttgaaagacctgctgaagggcaaagtt
caggaaacgctgtcggcagtggcagacgacggcatcgaacagagcgggctgcatatctgg
agcttcggccaactaccggaaagctatgagcaaaaacgcggcaactataaggttaaagcg
tggccagcgctggtggatgagcgtgacagcgtagccatcaaactgtttgataatccactg
gaacaacagcaggcaatgtggagcggtttacgccgcctgctgctgctgaatattccgtcg
cccatcaagtatctgcacgaaaaactgcctaacaaggccaagctgggcctgtactttaac
ccgtatggcaaagtgctggatttaattgacgattgtatctcctgcggtgtggatcggctg
atcgatgccaacggtggcccagtgtggacggaagagggctttgcggcgctgcacgagaaa
gtgcgtgccgaactgaacgacaccgtggtggagattgctaaacaggtcgaacagatcctg
acggcggtgttcaatatcaacaaacgtctcaaaggtcgcgtggatatgaccatggcgctg
gggctttcggatatcaaagcgcaaatgggcgggctggtctaccgtggatttgtcaccggt
aacggcttcaagcgtttgggcgatacgctgcgttatctgcaggcgattgaaaaacggctg
gagaaactggccatcgatccgcaccgcgatcgcgcgcagatgctgaaagtggacagcgtg
cagcaggcctggcaacagtggtttaataaactccctcccgctcgtcgtgaagacgatgac
gtaaaagagatccgctggatgatagaagaactgcgagtcagctactttgcccagcagcta
ggaacaccgtatccgatttcggataagcgtattctgcaggctatggatcagattagcggt
taa
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