Citrobacter tructae: E4Z61_08325
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Entry
E4Z61_08325 CDS
T07250
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
citz
Citrobacter tructae
Pathway
citz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
citz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4Z61_08325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
citz03019
]
E4Z61_08325
03009 Ribosome biogenesis [BR:
citz03009
]
E4Z61_08325
Enzymes [BR:
citz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E4Z61_08325
Messenger RNA biogenesis [BR:
citz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4Z61_08325
Ribosome biogenesis [BR:
citz03009
]
Prokaryotic type
rRNA processing factors
E4Z61_08325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QBX80365
LinkDB
All DBs
Position
1554183..1557407
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPTEEEYVERKQPEQPALATFAMPEVPPA
PQEPAVKAAAAAPKAAVVAAGTEQPGLFGRFLGALKSIFGGTEEAKPVEQPAPTAEEKSE
RQQDRRKPRQNNRRDRNDRNDRRDNRDNRGDRDNRNERSESGENRDDNRRNRRQSQQQNV
EPRDNRQQSTDVADKAKSGDEQQAPRRERNRRRNDDKRQAQQDVKELNLTEQPAQDTDQE
ERVRQPQSRRKQRQLNQKVRFTDSATAEAEVATAAVVAEAAVAEPVVQAAVAQRTELAKV
DLPAVVAPEHEDNSEARDTNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPIAVAC
ASPELASGKVWISYPVARPQELQVEEQNEQDVAQMQQLVAEQQTIAAVVEPVVEAVAVTE
APAINETIVAEPQEVVVETTHPDVIATPVEEQPQLIAEADVPVAEEIVAVSEPVADVLET
PVVEAPVQVDVAVAKPEVVEPVVEVATASPAPQEDVVVAEAVVERVSVIAEPKTVHSHAT
APMTRAPAPDYVPEAPRQSDWQRPAFGFEGKGAAGGHSATHQATAPATRPQPVE
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcgactcagcaagaagagttgcgtgtcgcccttgtagat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgagcagaaaaaagccaac
atctataaaggtaaaattacccgtattgaaccgagtctggaagccgcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aattacaactcccacggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtg
attgttcagattgataaagaagaacgcggcaacaaaggtgctgcgttgaccacctttatc
agcctggcgggtagttatctggttctgatgcccaataacccgcgcgcgggtggtatctct
cgtcgtatcgaaggcgacgaccggactgaactcaaagaagcgctggcaagcctggaactg
cctgatggcatggggcttatcgtacgtaccgcaggcgttggcaaatccgccgaggcgctg
cagtgggatctgagcttccgtctgaagcactgggaagcgattcaaaaagccgctgacagc
cgtccagctccgttcctgatccaccaggaaagcaacgtcatcgttcgcgcattccgcgac
tatttgcgtcaggatatcggcgaaattctcatcgacaacccgaaagtcatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactttacacc
ggtgaaattccgctgttcagccactatcaaatcgagtctcagattgagtctgcgttccag
cgtgaagtgcgcctgccttccggcggttctatcgttatcgatagcaccgaagcgctgacc
gcaattgatatcaactccgcacgcgccacgcgtgggggcgatatcgaagaaaccgcattt
aataccaaccttgaagcggccgatgaaatcgctcgccagctgcgtcttcgtgaccttggc
ggcctgattgttatcgacttcatcgacatgactccggtacgccaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtacgccaggaccgtgcgcgtatccagattagccacatttct
cgtttcggcctgctggagatgtctcgtcagcgtctaagcccgtcactgggtgagtccagt
catcacgtctgcccgcgctgtagcggtactggcaccgtgcgtgataacgaatcactgtcg
ctgtctattctgcgcctgattgaagaagaagcgctgaaggaaaacacccaggaagtccac
gcgattgtcccggtgccaattgcatcttatctgctcaacgaaaaacgtactgcagtcaat
gccattgaaacccgccagaacggcgtgcgttgtgtgatcgtgccaaacgatcaaatggaa
acgccgcactactctgttctgcgcgtacgtaaaggtgaagagacatcgactctgagctat
cttctgccgaaactgcacgaagaagagatggcgttaccgacagaagaagagtacgtcgag
cgtaaacagcctgagcagcctgcgctggcgaccttcgccatgcctgaagtgccgcctgcc
cctcaggagcctgccgttaaagcagcagctgccgcaccaaaagcagccgttgttgcagcc
ggaaccgagcaacctggtttgtttggccgcttcctcggcgcactgaagtcaatcttcggt
ggcactgaagaagcgaagccggttgagcagcctgcaccaacagctgaagagaaatctgaa
cgccagcaggatcgtcgtaaacctcgtcagaacaatcgtcgtgaccgtaacgatcgtaac
gatcgccgtgataatcgcgataaccgtggcgaccgtgataaccgcaatgaacgttctgaa
agcggcgaaaaccgcgatgacaatcgccgtaaccgtcgccagtcgcagcagcaaaatgtg
gaaccgcgcgataaccgccagcagtccaccgacgtcgctgacaaagcgaagtctggggat
gagcaacaggctccgcgtcgtgaacgcaaccgccgtcgtaacgatgacaagcgtcaggcc
cagcaggacgttaaagaactgaacctgactgaacagccggcacaggatacggatcaggaa
gagcgcgttcgccagcctcaaagccgccgtaaacagcgtcagttgaaccagaaggtgcgt
ttcaccgatagcgcgactgccgaagccgaagtcgcgaccgctgccgttgttgctgaagcc
gctgtggcagaacctgttgtacaggctgctgtcgctcagcgtactgaactggcaaaagtc
gacttacctgccgtcgtcgcaccagagcatgaagacaacagcgaagcacgtgataccaac
ggtatgccacgtcgttctcgccgttcgcctcgccatctgcgcgtaagcggccagcgtcgt
cgtcgctatcgtgacgaacgttacccggttcagtcgccgatgccgatagcggtcgcctgt
gcgtctccggaattagcgtctggcaaagtttggatcagctaccctgttgcccgtccgcag
gaattgcaggttgaagaacagaatgagcaagacgttgcacagatgcagcagctcgtcgct
gaacaacaaaccattgccgcggtcgttgagcctgtagttgaagctgtagcagtaacagaa
gcaccggctatcaacgaaaccatcgttgccgaacctcaggaagtggtggttgaaaccacg
catccagacgttattgcgacgccagttgaggaacaaccgcagctcatcgctgaagctgac
gtaccggttgctgaagaaatcgttgctgtatccgagccagtggcagatgtactagaaacc
ccggttgtcgaagcacctgtccaggttgatgtcgccgtcgccaagccagaagtggttgag
ccggtagtcgaggtcgctacagcgtctcctgctccgcaggaagacgtcgttgtcgctgaa
gcggttgtagaacgagtatctgttatcgctgaacctaaaacggttcatagccacgcaacc
gcaccgatgacccgtgcacctgcgccggactatgtaccggaagcaccgcgtcagagcgac
tggcagcgtcctgctttcggcttcgaaggcaaaggtgccgcaggcggtcacagtgctaca
catcaggctactgcgccagcaacgcgcccgcagcctgttgagtaa
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