Citrobacter tructae: E4Z61_14660
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Entry
E4Z61_14660 CDS
T07250
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
citz
Citrobacter tructae
Pathway
citz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
citz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4Z61_14660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
citz03019
]
E4Z61_14660
03016 Transfer RNA biogenesis [BR:
citz03016
]
E4Z61_14660
Enzymes [BR:
citz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E4Z61_14660
Messenger RNA biogenesis [BR:
citz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4Z61_14660
Transfer RNA biogenesis [BR:
citz03016
]
Prokaryotic type
tRNA degradation factors
E4Z61_14660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QBX81540
UniProt:
A0ABX5T8Z3
LinkDB
All DBs
Position
complement(2907270..2909732)
Genome browser
AA seq
820 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAVELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPDA
VVKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDEELREQYAPLVKHIEELHNLYKVLDKG
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELSGGNKPEPRDYAELLDSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTAREKAKKVDAGKNTGRRRQVGKKVNFEPDSAFRGEKKGKAKPQ
ADKKTAEKKGDKKAKKPSSKTLKIAAATKAKRAAKKNVAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagcagaaaaatacgcgaatcccatcccgagc
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccaaccgcgatgagctg
gccgttgaactcaacattgaaggcgaagagcagcaagaagcgcttcgccgtcgcctgcgc
gcgatggagcgtgatgggcaactggtcttcactcgtcgccagtgctatgcattgccggag
cgtcttgacctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgc
gtcgaaggccgcaaagacgatctgtacctttccagtgagcagatgaaaacctgcatccat
ggcgatcaggtgctggcgcaaccgctgggcgcggaccgtaaaggccgccgcgaagcgcgg
attgtgcgcgtactggtgccgaaaaccagccagattgtcggacgttacttcaccgatgcg
ggcgtaggctttgtggttcctgacgacagccgtctcagcttcgacatcctgatcccgcct
gaagaagtgatgggggctcgcatgggctttgtggtggtggttgaactgacccagcgcccg
acccgtcgcaccaaagcagtaggtaaaattgttgaagtgctgggtgacaacatgggcacc
agcatggccgttgatatggccctgcgtacgcatgaaatcccttatatctggcctgatgcg
gtagttaaacaagtcgctgggctgaaagaagaagtcccggaagaagccaaagtcggtcgt
gttgacctgcgtgatttaccgttggtgacgattgatggcgaagatgcgcgtgactttgat
gatgcggtctactgcgagaagaaacgcggaggcggctggcgtttgtgggtggctatcgct
gacgtaagctattacgttcgtccgccgactccgctggatcaggaagcgcgcagtcgcggt
acttccgtctacttcccgtcgcaggttgtgccaatgctgccggaagtcctttccaacggt
ttatgttcactgaacccgcaggtggacagactgtgcatggtctgtgaaatgaccatttcc
acgaaagggcgtctgacgggctacaaattctatgaggcggtgatgagctctcacgcgcgc
ctaacctacaccaaagtctggcacatgctgcagggtgatgaggaattgcgtgagcaatat
gcgccgttggtaaaacacattgaagagctgcacaatctctacaaagtactggataaaggc
cgtgaagagcgcggcggaatctcgtttgaaagtgaagaagcgaagtttatcttcaatgcc
gagcgccgtattgaacgtatcgagcagacgcagcgtaatgatgcgcacaagctgattgaa
gagtgcatgatcatggcgaatatctcagcggcacgattcgtcgagaaagccaaagagccg
gcgctgttccgtattcacgacaagccgacgactgaagccattacctccttccgttccgta
ctggcggagttgggactggaactgtcgggtggtaacaaacccgagccgcgtgattacgct
gaactgctggattcgattgccgaccgtcctgacgcagaaatgctgcaaactatgctgctg
cgttccatgaagcaggcgatttacgatccggaaaaccgcggtcactttggcctggcgctg
cagtcttatgcgcactttacctcgccgatccgtcgttacccggatctctccttgcaccgt
gcgatcaagtatctgctggctcaggagcagggtcataaaggcaacaccacggaaaccggt
ggctaccattattcgatggaagaaatgctgcagctgggtcagcactgttcgatggccgaa
cgccgtgctgatgaagccacgcgtgatgtctccgactggctgaagtgtgacttcatgctg
gatcaggtcggtaatgtctttaaaggtgtgattgccagcgttaccggttttggcttcttt
gtccgcctggacgaactgtttatcgacggtctggtgcatgtctcctcgctggataacgac
tactatcgcttcgatcaggttgggcaacgcctgaccggtgaatcaagcggtcagatgtat
cgcctgggcgatcgcgttgaagtccgtgtggaagcggtcaacatggacgagcgtaaaatc
gactttagtctgatctccagcgaacgtgcgccgcgtaacgaaggtaaaaccgcgcgcgaa
aaagccaaaaaagtcgatgcgggtaaaaataccggcagacgtcgtcaggtaggaaaaaag
gtgaatttcgagccggacagtgcattccgtggcgagaaaaaaggcaaagccaaacctcag
gcggataaaaaaacggctgagaaaaaaggcgataaaaaagcgaaaaagccatcgtcaaaa
acgcttaaaatcgcggccgccaccaaagctaaacgcgcggcgaaaaagaacgtcgcacaa
taa
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