Clostridium innocuum: G4D55_02670
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Entry
G4D55_02670 CDS
T06525
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4D55_02670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciu03019
]
G4D55_02670
Enzymes [BR:
ciu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4D55_02670
Messenger RNA biogenesis [BR:
ciu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4D55_02670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
P-loop_SecA
UvrD-helicase
Utp25_C
DUF6991
Cas3-like_C_2
Flavi_DEAD
HP0268
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIX08046
LinkDB
All DBs
Position
539002..540315
Genome browser
AA seq
437 aa
AA seq
DB search
MKFQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI
QLLKKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILKAG
VDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQTLF
FSATMPSEIRKLAQSLLHELVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKLLQKNRV
QNALVFTRTKSNANRLAKYLNENGVTTGVIHGNKSQNARQQALLQFKEGKSRVLVATDIA
ARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKNIEKLIR
MHIPVVEDREFPMRNLEPAASAQSQNRRRQKPAAKPSVSNRSENRSAAMKTQTSAATPKR
NNRRRRPQSQKQPAHTA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaaacattacatataacagagcctattttaaaggctgttaaagaacaggga
tatgttgatcccacaccaattcaggaacaggcgataccctacgctttgcagggtcgtgac
attctcggctgtgcacagaccggtaccggaaaaacagcagcattttccattccgacaatt
caattgttaaagaagcattataaacaaagcatccgctccctaatcgtaacaccgaccaga
gagcttgccatacagattcaggaaaacatcacagcgtatgcccaatatacaacaatacgc
agtgccgtcatctttggcggtgtaccgcagaagccgcaggaacgtattttgaaggccgga
gtggatattctggtcgcaacacccggtcgattgaatgatctgattcaacagggcataatt
gacatcagccatattgaaatcttcatactggatgaagcagaccgtatgctggatatggga
tttcttccggatgtaaagcggattatcgcaaagctgcccaaaaggaagcagacattgttt
ttcagtgccaccatgccttcagaaatccgtaaacttgcccagtccttactgcatgagctt
gtcagcattgaggtgacaccggcatcaactacagtggaaaagatcgatcagagtctgtat
tatgtggacaaagcaaacaaaaaacgcctgctgttaaagcttttacagaagaaccgcgta
caaaatgcacttgtattcacaaggacgaaaagcaatgcaaaccgtctggcaaagtatctg
aatgaaaacggtgtaacaaccggtgtgattcatggaaataaatctcagaatgcgcgtcag
caggcattgctgcaattcaaggaaggaaaaagccgggtacttgttgctacagacatcgcc
gcaagaggaatcgatgttcaggagctgagtcatgtatttaactttgatatccccaatgag
gctgaagtatatgtacatcgcattggacgtaccggcagagccggcagacagggctgtgcc
attgcattctctgactgcaatgaagcagagtatgtaaagaatatcgaaaagctgattcgt
atgcacataccggttgtggaggaccgcgagtttccaatgcgtaatctggagcctgcggca
tctgcacagtcgcagaatagaagaaggcagaaacccgcagcgaagccttccgtatccaat
cgaagtgagaaccgcagtgctgcaatgaagacgcaaacatcggcagctacaccaaagcgg
aacaaccgcagacgcagaccgcagtcacaaaagcagccggcacatacagcataa
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