Clostridium innocuum: G4D55_08730
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Entry
G4D55_08730 CDS
T06525
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03030
DNA replication
ciu03410
Base excision repair
ciu03420
Nucleotide excision repair
ciu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4D55_08730 (polA)
03410 Base excision repair
G4D55_08730 (polA)
03420 Nucleotide excision repair
G4D55_08730 (polA)
03440 Homologous recombination
G4D55_08730 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciu03032
]
G4D55_08730 (polA)
03400 DNA repair and recombination proteins [BR:
ciu03400
]
G4D55_08730 (polA)
Enzymes [BR:
ciu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G4D55_08730 (polA)
DNA replication proteins [BR:
ciu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G4D55_08730 (polA)
DNA repair and recombination proteins [BR:
ciu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
G4D55_08730 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G4D55_08730 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QIX09141
LinkDB
All DBs
Position
1815048..1817633
Genome browser
AA seq
861 aa
AA seq
DB search
MKKLLLIDGNSMLFRAYYATVYGRMMKTSNGVPTNAVYGFITMINKALSMVEPDAVLVAW
DAGKSTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIGSMA
KKYPDVEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKESMGIVPSQIIDLK
ALMGDTADNIPGVKGIGEKTALKLLSEYETVDNVYAHIDEIKGKLKEKLETDKEKAFLSK
YLATIKVDAEIPLPFADMMLKEPGEELHDFFVKYEMKSFVKETMDTREVKKEGSRTIVKQ
ISPDLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYIELSDALQDTAFLEWLKEENG
KAVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFDRSLLKDDVF
GKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFTTIEMPLTHVLYAME
KEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGMEFNINSPKQLAGILYDELGLKAGKK
RSTAADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSKHVLKDGKIHTIFNQIQTQTG
RLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAF
NHGIDIHTKTAMQIFDVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAF
IDKYFASYPNIKSFMDTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAP
IQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMRTIVEEGMQHA
MKLRVPLIAEANIGRTWYDAK
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacttttactgattgatggaaattccatgctgtttcgtgcatactacgcgaca
gtatatggaagaatgatgaaaacgagcaatggtgtgccgaccaatgcagtatatggcttt
attacgatgatcaacaaggcgctgtccatggtggagccggatgcggtgctggtcgcatgg
gatgcaggcaagtcgacctttcggcatgagacgtataccgaatataagggaaccagaaaa
gaactggatcaggagctgatcgtacagtttccgattgcccgtgaatttctggatgcctat
ggcatgaagcgctatgaatgcgagggtattgaggcggatgatatcatcggaagtatggca
aagaaatatccggatgtggaaatacatatcttatccagtgaccgtgacctgctacagctg
attgatccgacaacggatgtctatctgatgaaaaagggtatcacggaaatggaagtcatg
gatgaggcaaagctgaaggaaagcatgggaatcgtaccctcacagattattgatctgaag
gcactgatgggagataccgcggataacataccgggcgtgaagggcatcggtgaaaagacg
gcactcaagcttttaagtgaatatgaaaccgtggataatgtgtatgcacatatcgatgaa
atcaagggcaagctgaaggaaaagctggaaacggataaggaaaaggcatttttatccaag
tatctagcgacgatcaaggtggatgccgaaattccgctcccctttgcggatatgatgctg
aaggagccgggggaagagctgcacgatttctttgtgaaatatgaaatgaagagctttgta
aaggaaaccatggataccagagaggtgaaaaaggaaggcagccgcacgattgtgaagcag
atttcgcctgatcttttacaggatggggcactggtgtatgccaatgtggataatgaaagc
tattatgatgcacagctgtatggctttgccatcagtctgcaggatcgcaccgagtacata
gagctgtcagacgccttgcaggatacagcatttctggaatggctgaaagaagaaaacggc
aaggcggtatatgatgcgaaaaacttctatcacgccctgcataaaaacaacattcccttt
gcggatgttacattcgatgtcatgattgcggcattcctggtggatggaacgctgtcagat
tacgataagctggcggagaagtatcagtttgaccgcagtctgttaaaggatgatgtattc
ggtaaaaagggcaagggaaagctggtggacagtgacgaggctgcccgctatgccatggcg
caggccgattatttacaggatctggttgccaaactggatacagcgttacgggaaatggaa
atgaaggagctgtttactaccattgaaatgccgctgacgcatgtgctgtacgcgatggaa
aaggaaggggttgttaccagcctttccactctggatgaaatcgcaaaggcgaccagtgat
aaaatcgatgccctgagtgcaaagatatacgagattgccggtatggaattcaatatcaat
tctccgaagcagctcgccggtattctgtatgatgagcttggcttaaaggcaggaaagaag
cgcagcactgcagcggatgtactggaaaagctggcatctcagcatccgatgattccgctt
ctgctggagcatcgcaagtatcagaaaatctattccacctatgcggttggcttaagcaaa
cacgttttaaaggatggtaagattcatacgattttcaatcagattcagacacagaccggc
cgcttgtcctcctcggaaccaaacctgcagaatatttccgtgcgggatgaggagggaaag
gagattcgcaaggcgtttgtcgccagtgagggacatgtgctgctgtctgcggattattcc
cagattgagctgcgtatgctggcacatatggcgaatgaagaggtgatgatcgatgccttt
aaccatggcattgatattcatacaaaaacggcgatgcagatattcgatgtggaacacgat
gccgtggatgccaatatgcgcaggagtgcgaaaacggtaaacttcggcattgtttacgga
cagagcgatttcggattgagtgagcagttgggcattacccgcaaggaggcacatgccttt
attgataaatattttgcatcctatccgaatattaaaagctttatggatacgacgatagca
ttttgcgaggagcatggctatgtgaaaacgctgttcaaccgccgccgctatatcaaggaa
atcagcgataagaattatatgatgcgggaattcggaaagcgtgcggctatgaatgcaccg
attcagggaagtgctgccgatttgatcaagcttgccatgattcatatatataagaaaatg
caggaggaacaggtgaaatcccgtatgattctgcagattcatgatgaattgatttttgat
gtctgggaagaggaactggaacagatgagaaccattgtcgaggagggcatgcagcatgcg
atgaagctgcgtgtaccgctgattgccgaggcgaatatcggcaggacctggtatgatgca
aagtag
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