Clostridium innocuum: G4D55_09635
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Entry
G4D55_09635 CDS
T06525
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ciu
Clostridium innocuum
Pathway
ciu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4D55_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciu03019
]
G4D55_09635
Messenger RNA biogenesis [BR:
ciu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4D55_09635
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QIX09309
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All DBs
Position
complement(1999713..2001551)
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AA seq
612 aa
AA seq
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MNNNHRNNRNTAPRNNQENTKNSYNKINTERGDTLIYAMGGLGEVGKNMYCFEHENEILI
IDSGVRFPEENLLGVDYVIPDYNYLVKNNRKRKVLIITHGHEDHIGGIPFLLKSVDIEAI
YAPAFAVALINKKLEERRMLRSVKIIEINDRSSVKMQHFTCGFFNTTHSIPDSLGILINT
PNGRIVHTGDFKFDLTPVGTNSDYQVMAYMGQIGVDLLLSDSTNSGVEDFSISEKKVAAE
ILDTMKKTSGRLIVATFASNVYRVSQIMEAAVACGRKVIIFGRSMENVVTIGRKMGKIKV
GEQHFLSPDQLGRTPANKTCIVCTGSQGEPLAALSRIANGTHRYIKLIPGDTVVFSSSPI
PGNGASVNQVVNKLFRAGANVLTKSILSNLHTTGHASQEEQKLMLQLIKPKYFMPIHGEY
KMLVQHKETGKETGLADDHIFTCANGDVLILRNHQVFESSWRIQADDIYVDGNDISGVST
AVLKDRTILADNGLVAAIIAIDSKENKVLCKPVIVSRGFVFIKDSQGLLREAEQIVYAAL
NEKMKERTTFSELKNCVRSTLEPFLYNKTHRNPIVIPVIINSKTAMAAMAQARAARATKR
PAKKKEPQNAQS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaatcatcgaaataatcgaaacactgcaccgagaaacaatcaggagaataca
aagaacagttataataaaatcaatacggaacgcggagatactctcatctatgctatggga
ggactgggcgaagtcggtaaaaatatgtactgctttgaacacgagaatgagatactgatt
atcgattctggtgttcgttttcctgaggaaaaccttctcggtgttgactatgtcattccg
gattacaactatctggtaaaaaataaccgcaagcgaaaggttctgatcatcacccatggt
cacgaggatcacatcggcgggatcccgtttttgttaaaaagcgtggatattgaggcaatt
tatgcccctgcctttgcagtggcactgatcaacaaaaagctggaggagcgcagaatgctg
cgcagtgtgaaaatcattgaaatcaatgatcgcagctcggttaagatgcagcatttcaca
tgcggcttcttcaatacgacacactccattcccgattctctgggaattttgatcaacacg
ccgaacggacgcatcgttcataccggcgatttcaaatttgacctgaccccggtcggcacc
aattccgattatcaggtcatggcgtatatgggacagatcggtgttgatctgctgctgagc
gattccaccaattccggtgtggaggatttctccatttccgagaaaaaggtggcagcggaa
attctcgatacgatgaaaaaaacaagcggacggctcatcgtcgcaaccttcgcttccaat
gtataccgtgtatcccagattatggaggctgcagttgcctgcggaagaaaggtgatcatc
tttggacgaagcatggaaaatgtcgtgacgattggacgcaaaatgggcaaaatcaaggtt
ggcgagcagcatttccttagtccggatcagctgggacgcacaccggcaaacaaaacctgt
atcgtatgtaccggaagtcagggagagcctttggccgccctgtcacggattgcgaatgga
acccaccgctacatcaagctgattccaggcgatacggttgtcttttcctccagtccgatt
ccgggcaacggtgcaagcgtcaatcaggtggtcaacaagctgtttcgcgccggtgccaat
gtactgacaaaatccatcctgagcaatctgcatacaactggacatgcctctcaggaggaa
cagaagctgatgctgcagctgatcaagccgaaatactttatgccgattcacggcgaatac
aaaatgctggtgcagcataaggaaaccggaaaggaaaccggactggcggatgatcacatc
ttcacctgtgcaaacggtgatgttctgatactgcgcaatcatcaggtgtttgaaagcagc
tggcgaattcaggcggatgatatatatgttgacggcaatgacatcagcggtgtatccaca
gccgtcctaaaggaccgaaccattctggctgacaacggtctggttgctgctatcattgcg
atagattccaaggaaaacaaggtgctgtgcaagccggtcatcgtttcccggggctttgtc
ttcatcaaggattcacagggtctgctgcgcgaagctgagcagatcgtgtatgcggcttta
aatgagaaaatgaaggaacgcaccaccttctccgagctgaagaactgtgtgcgctcgaca
ctggagccgttcctgtataacaagacgcatcgtaatccaatcgtcatccctgtcattatc
aattccaagacggcaatggctgccatggcacaggccagagctgccagagcaaccaagcgt
ccggcaaaaaagaaggaaccgcagaacgcacaatcctag
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