Clostridium innocuum: G4D55_10970
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Entry
G4D55_10970 CDS
T06525
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ciu
Clostridium innocuum
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciu03019
]
G4D55_10970
03009 Ribosome biogenesis [BR:
ciu03009
]
G4D55_10970
Enzymes [BR:
ciu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4D55_10970
Messenger RNA biogenesis [BR:
ciu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4D55_10970
Ribosome biogenesis [BR:
ciu03009
]
Prokaryotic type
rRNA helicases
G4D55_10970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
QIX09567
LinkDB
All DBs
Position
complement(2267403..2268767)
Genome browser
AA seq
454 aa
AA seq
DB search
MSKYTDYNFRETTKTFINLEGFKEPTPIQQAVIPLACKGRNIIGISDTGTGKTHSFLIPI
MERVDSSLSVIQAVITAPTRELALQIYNRCEKMSEADPKLRIRLITGGMEKSRMNEQLKV
QPHIVVGTPGRIKDLFLQEQTLRVDTADIMVVDEADMTLEFGFLEDVDAIAGKMKKNLQM
MSFSATIPVALQQFLKKYMDNPSTVHIQEQSDFHPKIEHVLIPCQEKSYEEKLMELLATF
TPYVCLIFANTRTQAASVAGMMRDAGYGIIELHGDLTPRERTKAMKDLVNIQKSYVVATD
IAARGIDIEGISHVISLGFPKELDYYIHRSGRTGRAGRDGICYALYKKQDDAMIRSLEVK
GVGFKHRNLKNGTWSELEPLHRKKVKKDDPLEKEISKIVSKKKKKVKPGYKVKRKQEVEK
LKRKARRQMIQEDIQRQKKERAKQRVMEKRGGQE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatatacggattacaactttcgtgagaccacgaaaacatttataaacctggaa
ggcttcaaagagcctacaccgattcagcaggcggtgatcccgctggcatgcaagggaaga
aacatcattggtatttccgatacgggtaccggaaaaacacattcctttctgattccgatt
atggagagggtggacagcagtctgtctgtgattcaggcagttataacggcaccgaccaga
gagcttgccttacagatttataatcgctgtgaaaaaatgagtgaagcagacccgaagctt
cgcatccgtctgattaccggcggtatggaaaaatccagaatgaacgaacagctgaaggta
cagccgcatatcgtcgtgggaacaccgggacgtatcaaggacctgtttttacaggaacag
accctgcgtgtggataccgctgatatcatggttgtcgatgaagcggatatgacactggag
tttggctttctggaggatgtggatgccattgccggaaaaatgaaaaagaatttacagatg
atgagcttttcagcaacgataccggttgcattgcagcagtttttaaagaaatatatggat
aatccaagtacggtgcatatccaggagcagagtgattttcatccgaaaatcgagcatgtg
ctgataccgtgtcaggaaaagagctatgaagaaaagctgatggagctgttagcgaccttt
acaccatatgtatgtctgattttcgctaacacgagaacgcaggccgcaagtgttgccggg
atgatgcgggatgccggatacggtattatcgagctgcacggggatttgacaccgcgagag
cgaacaaaggcgatgaaggatttggtaaatatacagaaatcctatgtggtagcgacggat
atcgctgcgcgcggtattgatattgaagggatttctcatgtgatttcattgggatttcca
aaggagctggattactatattcatcgaagcggacgtaccggacgtgccggtcgggacggt
atctgctatgccctgtataaaaagcaggatgatgccatgatccgctccctggaggttaag
ggagtcggcttcaagcatcgcaatctgaaaaacggcacctggagtgagctggagccgctg
catcgcaaaaaggtcaaaaaggatgatccgctggaaaaggaaatttccaaaatcgtttcc
aaaaagaagaaaaaggtgaagccgggctataaggtgaaacggaagcaggaagtggaaaag
ctgaagcgtaaggcacgccgccaaatgattcaggaggatattcagcggcagaaaaaggaa
cgtgcaaagcaaagggtcatggagaaacggggtggacaggaatga
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