Clostridium innocuum: G4D55_11505
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Entry
G4D55_11505 CDS
T06525
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03030
DNA replication
ciu03430
Mismatch repair
ciu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4D55_11505 (dnaE)
03430 Mismatch repair
G4D55_11505 (dnaE)
03440 Homologous recombination
G4D55_11505 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciu03032
]
G4D55_11505 (dnaE)
03400 DNA repair and recombination proteins [BR:
ciu03400
]
G4D55_11505 (dnaE)
Enzymes [BR:
ciu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G4D55_11505 (dnaE)
DNA replication proteins [BR:
ciu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G4D55_11505 (dnaE)
DNA repair and recombination proteins [BR:
ciu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G4D55_11505 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QIX09670
LinkDB
All DBs
Position
complement(2370753..2373833)
Genome browser
AA seq
1026 aa
AA seq
DB search
MSVHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKP
IFGMEVDVLEQEELYGFVVLAKNDAGYQNLLKLSTWLNTGEERRIPDLDTLAYYAKDCIV
LTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSDFYVSIARNDSGLMEKKNPVLKQVCKE
LDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDKMLNYSPRRYFRTPQEMQLLYEDE
ELQMSDRIAALCQVEMQLPKAVLPKFQNKYGVSSEEFLRSLCQKGLQKRMQYQPISSVYQ
QRLDYELDVIIRMQYADYFLIVWDFIRFAKTQHIYIGPGRGSAAGSLVAYCLGITHVDPI
RYHLLFERFLNPERISMPDIDTDFPDNRRDEVIHYVEQLYGKHRVSHIITFNTLAAKQVL
RDVGKAMEINPRQIDRLCKLVPNVIKVTLDYAYQNDARFKELINSGETMRRLYATARKLE
GLPRHASLHAAGIVFSDEAIEQVCPLIDVDEGICATQFTMEYLEELGLIKMDFLGLRNLT
IIDEIVQHINATADKKLDIMRIPLDDAKTYALIRAVDTVGVFQLESEGMKNLIRKMQPNC
FEDIVATIALFRPGPMENIPEYLDRREHPEKVDYIHPSLQPILQNTYGIMIYQEQIMQVA
QTMAGFTLGKADNLRKAISKKKGEELRRMQAEFISGALRKGYDEALAQKVYALIMKFANY
GFNRSHSVAYGMIAYQLAYLKANAPLYFFNSLLNSVIGSETKTSEYVFEARKRNIQILLP
DVNRSHNQYGIEDNALRFPFVGIKGIGSAVSSLIVEERDKKGEFRDFFDFTARMNGNKIG
KKTIEILIYAGALDCFKVGRASLMASLEDALRYADLVKIEDVDQVLFDFDLVSKPAMTMM
RDNATIRSEKEKEAIGFYLSRHPIADVRSRMGKDLPILISLPKYKGRYVKFVCLVDRCRQ
YRTKNGDMMMFVIGSDETGKFDLVCMPNIYRQHADDLVKGNYLYVEGIVDKETSCLVKKL
TRIEKE
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtccacttacatgtgcgaagctgctataccctgctgcagagcaccctgacgatt
cccaaaatcgttgcggctgccaagcgctgcggctatacagcggtcgcattgacagacaag
catgtcatgcacggcgctatggcgttttaccatgcatgtaaaaaggaaaatatcaagccg
atattcggtatggaagtggacgtgctggagcaggaggagctgtatggctttgtcgttctt
gcgaaaaatgatgccggctatcagaatctgctgaagctgtccacctggctgaataccgga
gaggaaagacgcataccggatttggatacgctcgcctattatgcaaaggactgtatcgtt
ttaacaaacggcgatcagaatcagatggagacccttatcgtaaaggaggagctggatctt
ctgcgccactggctgaagctgtgccgaaagcagttttctgatttttatgtatccatagca
cgcaatgattccggcttgatggaaaagaaaaacccggtcttaaagcaggtgtgcaaagag
ctggatattccctatacggcattgtcccgcatatattttgaacgggaagaggatgaggag
agctataagacgctgtgtgcaatcgatcagggagtgtcgctccatgataaaatgctgaat
tacagcccgcgccgatattttcgcacaccccaggaaatgcagctgctgtatgaggatgag
gagctgcagatgagtgatcgaatcgcagcgctgtgtcaggtggaaatgcagctgcctaag
gctgtgcttccgaaatttcaaaacaagtacggcgtaagcagtgaggaattcttgcgtagt
ctttgtcagaagggactgcagaagcgtatgcagtaccaaccaatttcatctgtataccag
cagcgtctggactacgagctggatgtcattatccgtatgcagtatgccgattacttttta
atcgtatgggatttcatccggtttgcgaagacgcagcatatttatatcggtcccggacga
ggaagtgctgccggttcccttgttgcatactgtcttggcatcacccatgtggatcccatt
cgctatcatctgctgtttgaacgttttctaaacccggagcgtatttccatgccggatatc
gatacggattttccggataaccgccgggatgaggtcattcattatgtggagcagctgtat
ggcaagcacagggtgtctcatatcatcacctttaatacactggcggcaaagcaggtgctg
cgggatgtgggaaaggcgatggaaatcaatccccggcagattgaccgtctgtgcaagctg
gttccaaatgtaatcaaggttacactggactatgcctatcaaaatgatgcgcgcttcaag
gagctgatcaacagcggagagacaatgcgccgtttgtatgcgactgcacgaaagctggag
ggactgccgcgtcatgcctcactgcatgcagcaggtatcgtgttttccgatgaagccatc
gagcaggtgtgcccgctgatcgatgtggatgagggcatttgtgccacacagtttacgatg
gagtatctggaggagctcggcttgattaaaatggattttctgggactgagaaaccttacg
attattgatgaaatcgtacagcatatcaatgcgacagcggataaaaagctggatatcatg
cggataccgctggatgatgccaaaacctatgcactgattcgtgccgtggataccgtgggg
gtttttcagctggagagcgagggaatgaaaaatctgatacggaaaatgcagccgaactgc
tttgaggatatcgtcgcaacgattgcactgtttcgtcccggaccaatggaaaatattccg
gaatacctggatcgcagagagcatccagaaaaggttgattatatccatcccagcctgcag
ccgattttacaaaatacctatggtattatgatctatcaggaacagattatgcaggtggca
cagacgatggctggcttcacccttggtaaggcggataatctgcgcaaggctatcagtaag
aaaaaaggggaggagctgcgcagaatgcaggcggaattcatatcgggagcactgcggaag
ggctatgatgaggcactggcgcagaaggtgtatgccctgattatgaaatttgccaattac
ggcttcaaccgttcccattccgtagcctatggtatgattgcctaccagctggcatatctg
aaagcgaatgctcccctgtacttctttaacagtctgctaaacagtgtgatcggctcggag
acgaaaacgagtgaatatgtatttgaggcacgcaagcgcaacattcagattctgctgccg
gatgtcaatcgttcgcacaatcaatatggaatcgaggataatgcacttcgctttccattt
gtcggtatcaagggcatcggcagtgcggtatcatcgctgattgtcgaggaacgagataaa
aagggtgaattccgtgatttctttgattttaccgcacgtatgaacggtaataaaatcggt
aaaaaaaccattgaaatcctgatatatgcaggtgcgctggactgctttaaggttgggcgt
gcgagtctgatggcatcactggaggatgcccttcgctatgcggatcttgtgaaaatcgag
gatgtggatcaggtgctgtttgactttgatttggtatccaagccggccatgacgatgatg
cgcgacaatgcaacgattcgctcggaaaaggaaaaggaggccatcggcttttatttgtcg
cggcatccgattgcagatgtgcgaagccgcatgggaaaggatcttccgattttgatttca
ctaccgaaatataagggccgttatgtgaaatttgtctgtctggtggatcgctgccgtcag
tatcgcacaaaaaacggcgatatgatgatgttcgtcatcggcagtgatgaaacaggaaaa
tttgatcttgtctgtatgccgaatatataccgccagcatgcggatgatctggtcaagggg
aattatctgtatgtggagggaatcgtggacaaggaaaccagctgtctggtcaagaagctg
acaaggatagaaaaggaatga
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