Clostridium innocuum: G4D55_13555
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Entry
G4D55_13555 CDS
T06525
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
G4D55_13555
09124 Replication and repair
03420 Nucleotide excision repair
G4D55_13555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciu03021
]
G4D55_13555
03036 Chromosome and associated proteins [BR:
ciu03036
]
G4D55_13555
03400 DNA repair and recombination proteins [BR:
ciu03400
]
G4D55_13555
Enzymes [BR:
ciu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
G4D55_13555
Transcription machinery [BR:
ciu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
G4D55_13555
Chromosome and associated proteins [BR:
ciu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
G4D55_13555
DNA repair and recombination proteins [BR:
ciu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
G4D55_13555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QIX10038
LinkDB
All DBs
Position
2799619..2801964
Genome browser
AA seq
781 aa
AA seq
DB search
MRVYRCKMSVRALVESVWIGGDLVSTAPSIERANLGSRIHRMLQSSAQGDYESEVFLKLS
SELDDILFEIEGRADGVRKEDDQVTIEEIKTTAIPFSELNEPVMVHLAQAYCYGHMYLAE
HVAPSIRIQMTYYQIDTEEIKQFDEEKTREELAAFYMDTLRRYVKWAALSRDLKISSSRT
LKELKFPFPDYRSGQRDFAVAVYKTILDREKLFASAPTGIGKTISTLFPSLKAIGEGKAE
KVFYLCAKNVTATVAYDTLRLLYKQEVSFKSVAITAKDKICFQDVRNCDPEVCPYAKGYY
DRCQDALYELLQETQFIDREAVEKKAQEHLICPFELSLDASLYGDVIVCDYNYVFDPRVY
LKRFFMEKGDYIFLVDEAHNLVDRARSMYSCELNKSAFLAAARNIQKQRKPLHAALRAVN
REFLRLKKQCEEEGQNFIHQKDPISSIRQRLADVIEQMDIYLQSEHEDTWDEELRDLYFS
CINYNRISEFYDEDFVTCYEKQSSDIVLKQLCLNPAHPLKETCAMGRSTVFFSATLSPID
YYLDLLGGTRKTRKLFLPSPFSAEKRKIVLCDAISTRYRNRDSSLHPIAAMIHAAVQAKT
GNYIVFLPSYAYMKQVAQTFCEQFPDIHVSLQESGMKEEEKQHFLEHFNTTQELHVLFCV
LGGMFSEGIDLKGEKLIGTIIVGVGLPQVNPQQELLREHFDEVNETGYAYAYQVPGMNKV
LQAAGRVIRSHSDIGIVLLIDERFTTPFYQRLLPEHMRPFQIINDPTRLHAAVKQFWQQN
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtgtatcgatgcaaaatgtccgtgcgcgctctggtagaatcggtatggatcggc
ggtgatctggtatccacagcgccatccatcgaacgggcaaatctgggtagccgtattcat
cgcatgctgcagagctctgcacagggagactatgaaagcgaagtatttctgaagctgtcc
agtgaactggatgatatcctgtttgaaattgaaggcagagcggatggtgttcgcaaggag
gacgatcaggtgacgattgaggaaatcaaaacaaccgcgattcccttttccgaattgaac
gagcccgtcatggtccatctcgcacaggcctattgctatggccatatgtatctggctgag
cacgttgctccctccattcgcatccagatgacctattatcagattgataccgaggaaatc
aagcagtttgacgaggagaaaacacgggaggagctggcggcattctatatggatacgctg
cggcgctatgtgaagtgggcagcactcagcagagatttgaaaatcagctcttccagaaca
ctgaaggagctgaagtttccgtttccggattatcgcagcggacagcgtgactttgcagtc
gccgtatacaaaaccattctggatcgggaaaagctgttcgcctccgcaccaaccggtatc
ggaaagacaatttccaccctgtttccgtctttgaaggcaattggagagggaaaggcggaa
aaggtattttatctgtgtgcgaaaaatgtaacggccacagttgcctatgatactctgcga
ctgctttacaagcaggaggtatcctttaaaagcgtggcaatcacagccaaggataaaatc
tgctttcaggatgtgcgtaactgtgaccccgaggtatgtccctatgcaaagggctattat
gatcgctgtcaggatgccttgtacgaactgctgcaggaaacacagttcatcgatcgtgag
gccgttgaaaaaaaagcacaggagcatttgatctgtccctttgagctgagccttgatgca
agtctgtatggggatgtgattgtctgtgactataactatgtatttgatccgcgggtgtat
ctgaaacgtttttttatggaaaagggagactatatttttctggtggatgaagcacacaat
ctggtggatcgtgccagaagcatgtacagctgtgagctgaataagtcggcgtttcttgcg
gcagcccgcaatatccaaaagcaacgcaagccgctgcatgcggcactgcgcgctgtcaac
cgtgaattcctgcggttaaaaaagcagtgcgaagaggaaggacagaattttattcaccaa
aaggatccaatttcttccatcaggcagcgtctggcagatgtgattgaacaaatggatatc
tatctgcagagtgagcatgaagatacctgggatgaagaattacgcgatctgtatttttca
tgcataaactacaaccggatttccgagttttatgatgaggattttgtcacctgttatgaa
aagcagagcagtgatatcgtactgaagcagctctgtctgaatccggcacatccattaaag
gaaacctgtgccatgggacgaagcactgtcttcttttctgcgacgctttctcccattgat
tattatctcgatctgctgggtggaacaagaaagaccagaaagctgtttcttccttctcca
ttctcggcagaaaagcgtaaaatcgtcctgtgtgacgccatttccacccgctatcgaaac
cgcgatagctccctgcacccgattgccgctatgattcacgcagcggtgcaggccaaaaca
ggaaattacattgtttttctgccaagctatgcctatatgaagcaggttgcccagaccttt
tgtgaacagttccctgatattcacgtatccttgcaggaaagcgggatgaaggaagaagag
aagcagcactttcttgaacacttcaataccacacaagaactgcatgttctgttctgtgta
ttaggcggcatgttttctgaaggaatagacctgaagggggaaaagctgatcggtacgatc
attgtcggtgtaggacttccgcaggtcaatccacagcaggagctgctgcgtgagcacttt
gacgaggttaacgaaacggggtatgcctacgcatatcaggtaccgggcatgaataaggta
ctgcaggctgccggccgtgttattcgctcgcacagtgatatcggtatcgtgttactcatt
gacgagcgcttcaccacaccgttttatcagcggctgttaccagaacacatgcggccgttt
caaattatcaatgatccaacccgtctgcatgcggctgtaaaacaattctggcagcaaaac
agctga
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