KEGG   Clostridium innocuum: G4D55_13625
Entry
G4D55_13625       CDS       T06525                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ciu  Clostridium innocuum
Brite
KEGG Orthology (KO) [BR:ciu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ciu02048]
    G4D55_13625
Enzymes [BR:ciu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     G4D55_13625
Prokaryotic defense system [BR:ciu02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   G4D55_13625
SSDB
Motif
Pfam: SWI2_SNF2 T1R_D3-like HSDR_N ResIII T1RH-like_C ZapG-like DEAD
Other DBs
NCBI-ProteinID: QIX10049
LinkDB
Position
complement(2817114..2820254)
AA seq 1046 aa
MSIGDTERATQDRVVSFFKDRDILDYEYLGNLKDAANKNIREDRLRAYLRLSGYSQKLID
GAVSELVKAADDMTHGLYDANHKVYSLLKYGAKVKETADGAPKTVYFMDIETPTNNDFAI
AEEVTVVDRQEKRPDIVIYVNGIAMAVIELKKSSVSVSNGIRQNLTNQKDGFIAPFFTTM
QFCMAGNEIEGLRYGTILTGEKYYMEWKPDGFHENEDERAPEDARIMAYCEKLDNLLLQQ
IYQMFDKKRFIDLIENFVVYDKGIKKVCRYNQFYGIKRTQNRLAKQRGGIIWHTQGSGKT
LTMVWLSKWILANCQEENPRVLIVTDRDELDEQIEKTYIGVDEKITRTKSCDDLLQKLNS
YDDSLLCSLVHKFGRRGGEATESDYDKYIDELKKALPADFKAKGKIFVFVDECHRTQSGK
LHAAMQAIMPEAIFIGFTGTPLLKKDKKTSIEVFGTYIHSYKYNEAVRDGVVLDLRYEYR
DIPQDITAHDRIDQWFDVKTRTLSSRAKAKLKEKWASMQKIYSSRSRLERVAWDIIQDFD
LKPRLMDGNGNAILVADSIYSACKYYEIFQQRGFKKCAIISSYTPQAGDLRTDTVSADEE
TETFEKYEIYLRMLGLNPDNLPEKVSIQKKVEEFEKEAKEKFINEPANMKLLIVVDKLLT
GFDAPPCTYLYIDKSMQDHGLFQAICRVNRLDGDTKEFGYIVDYKQLFGNLKNAMDKYTS
GAFENYAPEDVDGLLKDRAAESIKHFKEIYEELEELREGVEAPREDLQYLHYFCGVSGMS
EDMDEIYARLREKLYKLVSSLVRAFAEAKQYMVDECTAAEMNDYENKVHFYIELKQTIGN
KSGDFLDFKAYEPDMRKLIDNYIMASDSIKIGEFDDLTLLDFVMDQGETMTGEDTPSGQK
EGAAEAIENNIRRKMVEKVTVNPKYYEKMSAILDKLIQDRQKGVLSYKELLDEYIKLAKN
VDHPEENEDYPESVRHSKAMQALYDNVGGDEALAIELHKAVMDSKMSGFRGDSIKERRIK
RALFAILNDDTEVERLYKIIEKQEEY
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgagtattggcgacactgaaagagctacccaagatcgtgtagttagcttctttaaggat
agagatatccttgattatgaatatttaggcaatttaaaagacgccgcaaataagaacatc
cgtgaagaccgtcttcgtgcgtacttacgccttagcggatacagccagaagttaattgac
ggtgctgtttctgaactagtaaaagcagcagatgatatgacacatggtttgtatgatgca
aatcataaagtctattcccttttgaaatacggtgcaaaggtaaaggaaacagccgacgga
gcaccgaagacagtttactttatggatattgaaacacctactaataacgactttgcgatt
gcggaggaagttacagtagttgaccgtcaggaaaagagaccagacatcgtaatttatgtg
aatggtattgctatggctgtcattgaattgaagaaaagtagtgtctctgtttctaatggt
attcgtcaaaatctgacaaaccagaaagatggattcattgcgccgttctttacgacgatg
caattctgtatggccggtaatgaaatagagggtcttcgctatggaacaatactgaccggt
gaaaaatattatatggaatggaagccagatggatttcatgaaaatgaagatgagcgtgct
ccagaggacgcacgcatcatggcttattgcgaaaaactggacaacctgcttttacagcaa
atttaccagatgtttgataaaaaacgttttattgaccttattgaaaactttgttgtgtat
gacaaaggaatcaaaaaggtatgtcgatacaatcagttttatggcatcaagcgtacgcag
aacagattggcaaagcagcgtggcggtattatttggcatactcagggtagtggtaaaaca
cttactatggtttggctttcaaaatggattcttgcgaattgtcaagaagaaaatcctcgc
gtgcttattgtaacagacagagatgagctggatgaacagattgaaaagacttatatcggc
gtcgatgaaaaaatcaccagaaccaagagttgtgatgacttgcttcaaaaattgaattct
tatgatgattcactgttgtgttcattggtgcataagtttggccgtcgtggtggcgaagct
acagaatccgattacgacaagtatattgatgagttaaaaaaagcgcttcctgcagatttt
aaagcaaagggtaaaatctttgtatttgttgatgagtgtcacagaactcagtctggtaaa
ttacatgcagcaatgcaggcaattatgccggaagcaatctttattggtttcacaggtaca
ccgttattaaagaaagataagaaaacaagtatcgaagttttcggaacatacattcacagc
tacaaatacaatgaagcggttagagatggtgttgtacttgatttgagatacgaatataga
gatattccacaggatattacagcccatgacaggattgaccagtggtttgatgtaaagact
cgtactctttcaagcagagcaaaggcaaagttgaaagaaaaatgggcaagcatgcagaag
atttatagttcacgttcaagacttgagcgtgttgcatgggacattattcaggattttgat
ttgaagcctcgtttgatggatggtaatggaaatgcaattcttgtagcggattctatctat
tcagcatgcaaatattatgaaatttttcagcagcgtgggtttaagaaatgtgcaatcatt
tcatcatatacaccacaggcaggagatctcagaacagatactgtaagtgcagatgaggaa
acagagacttttgaaaaatatgagatttatcttcgtatgttaggacttaatcctgacaat
cttccggagaaagtttctattcaaaagaaagtggaggaatttgaaaaagaggcaaaggaa
aagtttatcaatgagcctgcaaatatgaagttacttattgtagttgataagcttctcaca
ggatttgatgcacctccttgtacatatctttacattgataagagcatgcaagaccacggt
ttattccaagctatttgtcgtgtaaatagattagatggtgataccaaggaatttggttat
attgtggattacaagcaactttttggaaatttgaaaaatgctatggataagtacacatct
ggagcatttgagaactatgcccctgaagatgtagatggacttcttaaagacagagctgcc
gaatcaattaaacatttcaaagagatttacgaggaattggaagaactccgtgaaggcgtt
gaagcaccaagagaagatctgcagtatttgcattatttctgtggagtttccggtatgagc
gaagacatggatgaaatctatgctcgccttagagaaaaattatataagcttgttagtagt
ttagttcgtgcattcgcagaagctaaacaatacatggttgacgaatgcacggcagcggaa
atgaatgattatgagaataaagttcatttttatattgaacttaaacagactattggaaac
aagagcggcgacttcttagattttaaggcatatgaaccggatatgcgcaaacttattgat
aattacatcatggcttctgatagtatcaaaattggtgaatttgatgacctaacacttctc
gatttcgtaatggatcaaggtgagacgatgaccggagaagatacgccttctggtcagaaa
gaaggtgcggcagaagcaattgaaaacaatatccgccgtaaaatggtagaaaaggtaact
gtaaatccaaaatactatgaaaagatgtcagcgattttggataaactgattcaagataga
cagaagggcgttttgtcctataaagaacttcttgatgaatatattaaactcgcaaagaat
gttgaccatccggaagaaaatgaagactatcctgaaagtgtgagacatagtaaagccatg
caagcattatatgataatgttggcggagatgaagcgttggctattgaacttcataaagct
gttatggatagtaagatgagtggttttcgtggggattcaattaaagaaagaagaattaag
agagcattgtttgcaattctcaatgatgatacagaggtggaacgtctgtacaagattatt
gagaagcaggaggaatattaa

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