Clostridium innocuum: G4D55_18105
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Entry
G4D55_18105 CDS
T06525
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4D55_18105 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciu03019
]
G4D55_18105 (rnr)
03016 Transfer RNA biogenesis [BR:
ciu03016
]
G4D55_18105 (rnr)
Enzymes [BR:
ciu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G4D55_18105 (rnr)
Messenger RNA biogenesis [BR:
ciu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4D55_18105 (rnr)
Transfer RNA biogenesis [BR:
ciu03016
]
Prokaryotic type
tRNA degradation factors
G4D55_18105 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1_RRP5
S1CSD-TOTE-2
OB_RNR_1st
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
QIX10858
LinkDB
All DBs
Position
complement(3715278..3717410)
Genome browser
AA seq
710 aa
AA seq
DB search
MNKKEELLALIHGNGYRGMHAAQLSRALDMEDSASFTQLMKLLNDLEAEHILARDAKERY
FTSEELGYVTGTLRINPKGFGFVETADTSYYIGRDHLGLGMDRDIVFAKTWTNNDKSVEG
EVIEVLEHSVRQLVGTVKIKEGRKYFLSDAFLNYRKVRITNFDDFRLVNDSKVLLGIDSY
GTVLKCHIEKEIGYKYDPGIDILSVLLEKDINPQFPEDVMQEVQQIPETIQEDDIAQRKD
LRKLLTITIDGEDAKDLDDAISVEKLENNKGYRLYVHIADVSHYVRAGSAIDQEAYARGT
SVYVVDRVVPMLPHALCNGICSLNPRVDRLTLTCCMDIDKKGEIDNYKIYPSIICSDERM
TYKKVNAILAGDAQSQKEYPHLLNLCLNMKVLSGIIRRRRERLGAIDFDTREAKILVDEK
GNPTDIVLRERGESERIIEDFMIAANECVAMHMKWMEVPSMYRIHEAPEPKKMRDFATTA
KSLGYNFQGGIQNVYPAQLQSLLNEARGQENYFVLSSFMLRAMQKARYDNRCIGHFGLAL
KNYLHFTSPIRRYPDLVVHRMLRRYIFTSSDDVERMKQDELWCEAAANQASERERNAVDA
EREVDDMKKAQYMERFVGHMFDGVVSGITKFGMFVELENTVEGLVHVTSLTDDYYHYDEM
TKSLIGEHTAKVYKMGQKVRVKCSGADRFKREVDFEVVEKKKRQRRKASR
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaaagaagaactgctggcgctgattcatggaaacggttatcgaggtatgcat
gcagcacagctttcaagagccctggatatggaagacagtgcatccttcacacagctgatg
aagctgttaaatgatctggaagcagagcatatactcgcaagagacgccaaggagcgttat
ttcacaagtgaagagctggggtatgttacaggtacactacgcatcaatccgaaaggcttc
ggctttgtggaaacagcggataccagctattatataggtcgggatcacctgggtctcggt
atggatcgggatattgtttttgcgaagacatggacaaacaatgataaaagtgttgaggga
gaagtgattgaggttctggagcacagtgtcagacagctggtgggaaccgtgaaaatcaaa
gagggcagaaaatatttcctgtcggatgcatttttgaattaccgcaaggttagaataaca
aacttcgatgatttccgtcttgtgaatgattccaaggttctgctaggaattgacagctat
gggactgtactgaagtgccatattgagaaggaaatcggttataaatatgatccgggtatt
gatattttatccgttttactggaaaaggatatcaatccgcagtttcctgaggatgtcatg
caggaggtacagcagataccggaaaccatccaagaggatgatattgcacagcgcaaggat
ttgcgaaagctgctgaccattacgatagatggagaggatgccaaggatctggatgatgcc
atatctgtggaaaagctggaaaacaataaaggataccggctgtatgttcatatagcggat
gtttcccattatgtgagggcgggaagtgccattgatcaggaggcctatgccagaggtacc
tcggtctatgtcgttgaccgtgtggtaccgatgcttccccacgccctatgcaatggaatc
tgttccctgaatccaagagtggaccgacttacgctgacatgctgtatggatatcgataag
aagggtgaaatcgacaattataagatatatccttccattatatgcagtgatgagcgaatg
acatataaaaaggtgaatgcgattcttgcgggtgatgcgcagtcacagaaagaatatccg
cacctgttgaacttgtgtctcaacatgaaggtgctttccggtatcatccgacggcgaaga
gagcgtctgggagcgatagattttgatacgagagaagcaaagattctcgttgatgaaaag
ggaaatccgacagatattgtgttgcgggagcgcggagagagtgagcggatcattgaagat
tttatgattgccgcaaatgaatgtgtcgccatgcacatgaaatggatggaggttccttcc
atgtatcgaatccatgaagctccggagcctaagaaaatgcgtgattttgctactactgca
aagtcactcggctataattttcagggcggtatacaaaatgtttaccccgcacagctgcag
agtctgctgaatgaggccagaggacaggagaattattttgtgttatcgagctttatgctg
cgggctatgcagaaggcacgctatgataaccgctgtatcgggcatttcggtctggcattg
aaaaattatctgcattttacttcgccgattcggcgttatccggatctggtagttcaccga
atgctgcggcgttatatctttacatccagtgatgatgtcgagcgcatgaagcaggatgag
ctgtggtgtgaggctgccgctaatcaggcaagtgagcgggaacgcaatgcagtggatgcg
gagcgggaagtagacgatatgaaaaaggcgcagtatatggagcgctttgtcgggcatatg
tttgacggtgttgtcagcggtatcaccaaattcggtatgtttgtcgagctggaaaacacg
gttgagggtcttgtgcatgtgacatccctaacggatgattattatcattatgatgaaatg
acgaaatctctgattggtgagcatacggctaaggtgtataaaatgggacaaaaggtacgt
gtgaaatgcagtggagcggatcgtttcaaacgggaggttgacttcgaggtcgtagagaag
aaaaagcgacagcgcaggaaggcatcccgatag
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