Clostridium innocuum: G4D55_19555
Help
Entry
G4D55_19555 CDS
T06525
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
ciu
Clostridium innocuum
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ciu03000
]
G4D55_19555
Transcription factors [BR:
ciu03000
]
Prokaryotic type
Helix-turn-helix
Other families
G4D55_19555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
AAA
AAA_5
EIIA-man
AAA_22
Mg_chelatase
AAA_2
RuvB_N
AAA_7
HTH_Crp_2
AAA_16
Sigma54_activ_2
AAA_14
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QIX11125
LinkDB
All DBs
Position
complement(4045033..4047762)
Genome browser
AA seq
909 aa
AA seq
DB search
MEENLRKLVKENTIHEKYKLNNASQLGTQLGLSRNWISQYLNEYYNDGTFIKINTRPVVF
LDREALEEKYSIRVDKNLLTSFDELRTIIQGQNISDFEKLIGQKGSLRDVVDKCKASISY
PPHGLPTLLYGPTGTGKSSIAAMMYEYGINHKILKDNAAFLHVNCSEYANNPELITANLF
GYKKGAFTGAECDNVGMIKAAEGGVLFLDEVHCLRPECQEKLFLFMDNGNYRMLGDNEHQ
YHSTVLLVFATTEDPETVLLKTLLRRIPVRIEIPSLEDRGIKEKTSILVEALDIEAKKMR
RNITISNTAFNALLNARYTGNVGELFNVVQATCMNSLFHNKKEGVLEIHTLNLPGKIISN
HHIDRNSILFDRHQMLSLDQLKQHASDSLPQTTLFATLLGHLRDLQNNRILMPKFIEKCT
VDVEHYFNSVLFDNRNIKDPTNTYIMKSLKAIVEMISEKYGYSFQTNEIYSMSLMIRDCM
QSYREMEEYFDTFSEECDNFTGIIEKKFMREYAIVSEISEVLKLHLDIELRPFIAAIFTL
IMHMYHRSKDINKRIGIILAHGYATASSIANAVNQMLDQYVYDAIDMPLDTTTETIVKKL
NDFLRKRGEYRDLVLLVDMGSLKEIHRGVSDISRANVAIASDVSTRMALQIGDALRKDVP
LKKIFEAYRETCDMHVEILESKVREKAILCSCATGIGTAEKLKTILEDSLPKNLPVRVLT
YDYSTLLENRMEDDFFDRYEVVCIVGTLNPNIDNIKFIPVEELIMNNSFDVLTIHFKDLL
NEEAMEQFRRNILKNFSLSNIIGNLTILNPDKLLRHVADAIDRLQKEMNRMFSYNMCFGL
YVHVCCLIERLVTREGAEDYVKSYAECSREMQEFILCIKAAFEKVEKYYSVSIPIEEIEY
ICIYIRNMQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaatttgcgtaagcttgtgaaagagaatacgatacatgaaaagtataagctg
aacaatgcttctcagctggggacacagctgggactcagcagaaactggatatcacagtat
ctgaatgaatactataatgatggaacatttatcaaaataaatacccgtccggttgtgttt
cttgaccgggaggcacttgaagaaaaatattccatacgggtggataagaacctgctgacc
tcttttgatgagctaagaacaatcattcagggacagaatatatccgattttgaaaaactg
atcggtcagaagggctctctgcgtgatgttgtggacaaatgcaaagccagtatatcctat
ccgccgcacggacttccgacactgctgtatggaccaaccggaacaggaaaaagcagcatt
gcggcaatgatgtacgaatatggtatcaatcataaaatcctcaaggacaacgctgccttt
cttcatgtaaactgcagcgaatatgcaaacaatccggagctgataaccgcaaacctgttt
ggttataagaagggagcctttaccggtgcggaatgtgataatgtagggatgatcaaggct
gcggagggtggtgtcctgtttctggatgaggttcactgtctgcgtccggaatgtcaggaa
aagctgttcctgtttatggataacggcaattaccgcatgctgggagacaacgagcatcag
tatcacagtacagtgcttctggtatttgcgacaaccgaggatccggaaacggtgctgtta
aaaacgctgctgcgaaggattcccgtacgtatagaaataccgtcgctggaggaccgcggc
atcaaagaaaagacctcaatccttgttgaggcactggatatcgaagcgaagaaaatgcgc
aggaatatcactatcagcaatactgccttcaatgcactattgaatgccagatatacaggg
aatgtcggtgagctgttcaatgttgtacaggcaacgtgtatgaattcactgtttcacaac
aaaaaagaaggagtactggagattcatacgctgaacctgccgggtaagattatttctaat
catcacattgatcgaaacagcattttattcgacaggcatcagatgctttcactggatcag
ctgaagcagcatgcatccgacagtctgccgcagaccacattgtttgcgacactgctcgga
cacctcagggatctacagaataaccgtattctgatgccgaagtttatcgagaaatgcacc
gtggatgtggagcattattttaattcggttctttttgataatcggaatatcaaagacccg
acgaatacgtatattatgaagtcactgaaggctattgtggaaatgatttcggaaaaatac
gggtattcctttcagacgaacgagatatattccatgtcccttatgatccgtgactgtatg
cagtcctatagagagatggaggaatattttgataccttttctgaggaatgtgataatttt
accggtatcatagaaaagaaattcatgcgggaatatgccattgtctcggaaatcagtgag
gtgctgaagctgcatcttgacattgaactgcgcccttttattgcggcgattttcacctta
atcatgcatatgtatcaccgcagcaaagacatcaataaacgtatcggcatcattctggca
catggttatgcgactgcctcctccatagcgaatgcagtaaatcagatgctggatcagtat
gtgtatgatgccattgatatgccgctggatacgactacggaaaccatcgtgaaaaagctg
aatgattttctgagaaagcggggagaatatcgcgatctcgtattgctggttgatatgggc
agtctaaaggagatacacaggggagtttcggatatatcgcgggcaaatgtcgccattgcc
agtgatgtcagtacaaggatggcactgcagattggagacgcactccgtaaggatgtacct
ttgaagaaaatttttgaggcataccgggaaacgtgtgacatgcatgtagagattttggaa
agcaaggtacgggaaaaagcaattttatgttcctgtgccaccggtatcggaactgcggaa
aagctgaaaacgatactggaggattcccttccgaaaaatcttcctgtacgtgtgcttacc
tatgattattcaacattgctggagaaccgcatggaggatgatttctttgaccgctatgag
gtcgtatgcattgtcggtacactgaatcctaacattgacaacataaaattcataccggtg
gaagagctgattatgaacaattcgtttgatgttttaacgattcatttcaaagacctgctc
aatgaggaagcaatggagcagtttcgaagaaatatcctgaaaaatttttccctgtctaat
atcatcggaaatctgaccatcctgaatccggataagctgctccggcatgtcgcagatgcg
attgaccgactgcagaaggaaatgaacaggatgttcagctataatatgtgctttggtctt
tatgtgcatgtctgctgtctgattgaacgtctggtaacccgtgagggggctgaggattat
gtgaaaagctatgcggaatgcagtcgtgaaatgcaggagtttattctttgtataaaagcc
gcatttgaaaaagtggaaaagtattatagtgtttccatcccgattgaggaaattgagtat
atctgtatctatattcgaaacatgcagtag
DBGET
integrated database retrieval system
