Clostridium innocuum: G4D55_20605
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Entry
G4D55_20605 CDS
T06525
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ciu
Clostridium innocuum
Pathway
ciu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ciu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G4D55_20605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciu03400
]
G4D55_20605 (mfd)
Enzymes [BR:
ciu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G4D55_20605 (mfd)
DNA repair and recombination proteins [BR:
ciu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G4D55_20605 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Glyco_hydro_115
DUF7764
Motif
Other DBs
NCBI-ProteinID:
QIX11321
LinkDB
All DBs
Position
complement(4258535..4261990)
Genome browser
AA seq
1151 aa
AA seq
DB search
MEILLKELQQNEAVLSIQKKESVLGNLSYMEEALLLAADYRQKPQKLLIIKNNAYTAQKL
YERLQALLGDEVLLFSLEESLRVEAIAASPENKAIQMEAMAKLQQQDAFVAVLNTAAAIR
FLPSPEVFKNHCITLKQDQEIEYEDLKQLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMN
YDHPLRIEFFDNIVESIRFFDIATQRTIEIVQEAMIIPASDLLFTDAQVAELVEQANKAL
KNQLSQHDIAMQKLLQEHVNEDLDLISNHMMESRFYKYYAFLKNRSTVFDYAPDAQIILS
SAEEVQDSVKHMHEEMVSYLQELFQEGISLYSFDVFTDLYSSIKKHSYMEFHQFVDYKKP
ITSQIMTMSLGDINLERTMQEVQHQARERRVLLCLNHKEQEQVKGLLEEANISWRNVTST
DTLEPGIQFLNASLPEGFTCLKEQICVYTGKELFHSVKKAARYSNKFKEAEVLHDYQELN
VGDYVVHNQHGIGKYLGIVNKKIDGVHKDFLHIAYKGDDVLLVPLEQFKLIRKFVSKEGA
SPKLNKLGSGEWEKTKKKVSAKIAELADRLVKLYASRDENIGHAFAKDTPLQKQFEEDFE
YELTPDQARAVQEIKQDMESAKPMDRLLCGDVGFGKTEVAARAAFKAVADCRQVAFLCPT
TILSLQHYKTFMKRFRNFPVNIAVVNRFIKPSDQKHIIHDLKEGNVDILIGTHRLLSKDI
VFKDLGLLVIDEEQRFGVEHKEKIKELKNSVDVLSLSATPIPRTLQMSLIGIRSLSQLET
PPMNRMPVQTYVIEKNFQMVKEIIQRELARNGQVFYLYNNVKEIYNVARKLRDAMPEVEI
GVAHGQMTREDIEDVMLQFTDNKYQVLVCTTIIETGIDIPNANTILIEDADHFGLSQLYQ
IKGRVGRSDRLAYAYLMYSPQKQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGDM
LGPQQAGFIDTVGIDMYIEMLNSAIMEKKGIKPEVKPEMTKANVKVDAYIPSSFATEDYE
KITLYQRMEDIHTKKELLAMMDEIKDNYGKLPKAVQLLFEKKRLDICINEPHVDAFRELP
KAVELAFTSAWSNSIDGVALFEMMTTISKNITIRYTNGKITMKLPKLKDWLYTVIEVLER
TEPMGEEQTAS
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggaaattctattaaaggagcttcagcagaatgaagcggttttgagtattcagaaaaaa
gagagtgttctgggtaatctttcgtatatggaggaggctcttctacttgcggcagattac
cgccaaaaaccgcagaagctgttgattatcaagaataacgcctatacagcacagaagctt
tacgagcgcctgcaggccctccttggggatgaagtgctgcttttctcattggaggaatca
ctacgcgtagaagcaatcgcagcttcaccggaaaacaaagcgatacagatggaggcaatg
gcaaagctgcagcagcaggatgcttttgtggcggttttaaatacagctgcagccattcgc
tttctaccctctcctgaggtattcaaaaatcactgtattacgttaaagcaggatcaggaa
attgaatatgaggatttgaagcagcttctctttgaagcaggctatacgcatgtcagccgt
gttgatcagccactgtgctatgcggcacgcggtggaatcattgatgtgtattccatgaat
tatgaccatccgctgcgtatagagtttttcgataatatcgtggaaagcatccgcttcttt
gatattgcgacacagcggacaattgaaatcgtacaggaagccatgattatcccggccagt
gatctgctgtttacagatgcacaggttgccgaactggtggagcaggcgaataaggcgctg
aaaaatcagctgtcccagcacgatatcgctatgcagaagctgctgcaggagcatgtgaat
gaagatctggatctcatcagcaatcacatgatggaaagccggttctataaatattatgcc
tttttgaaaaacagaagcacggtctttgattatgccccggacgcacagatcattctgtcc
agcgcagaggaagtgcaggacagcgtcaagcatatgcacgaggaaatggtttcctatctt
caggagctttttcaggagggaatcagtctgtacagctttgatgtgttcacagatttgtac
agctccatcaaaaagcacagctatatggaatttcatcagtttgtcgattataaaaaaccg
ataacctcacagatcatgaccatgtcactgggagatatcaatctagagcgtaccatgcag
gaggtacagcatcaggcaagagaacgaagggttctgctctgcttgaaccacaaggagcag
gaacaggtgaaagggctgctggaggaagcaaatatatcctggcgcaatgtaacgtccacg
gatacgctggaaccgggaatccagtttctgaatgccagtcttcccgaaggctttacctgc
ctgaaggaacaaatctgtgtctataccggaaaggaactgtttcacagtgtcaaaaaagca
gcccgctacagcaataaattcaaagaggcggaggttctgcatgattatcaggagctgaat
gtcggagattatgtagtacacaaccagcatggtatcggtaaatatctgggaattgtgaat
aagaaaatagatggtgtacataaggattttctgcatatcgcctataagggagatgatgtt
ctgcttgtaccgcttgaacagtttaagcttatccggaaatttgtatccaaggaaggtgca
agtccgaagctgaataagctgggcagcggagaatgggagaagacaaagaaaaaggtcagc
gcaaagattgcagagctggcggatcgtctggtgaagctgtatgcatccagagatgagaat
atcggacatgcattcgcaaaggacacccctttgcagaagcagtttgaagaggattttgaa
tatgagctgaccccggatcaggcaagagcggtacaggaaatcaagcaggacatggaatct
gcgaagccgatggatcgtctgctatgcggagatgtaggctttggtaagacagaggttgcg
gcccgtgcggcatttaaggcagttgcggattgccggcaggtggcattcctgtgtccgacg
acgatcttatcccttcagcattataaaacctttatgaagaggttccgcaattttcctgtg
aatattgccgttgtaaatcggtttatcaagccctcggatcaaaagcatatcatccatgat
ctgaaggaaggaaacgtggatatcctgataggaacacaccgtctgctttccaaggatatc
gtatttaaggatttgggactgcttgtcattgacgaggaacagcgctttggtgtggagcat
aaggaaaaaatcaaggagctgaaaaacagtgtggatgtcttatcgttaagtgcaaccccg
attccgcgtaccctgcagatgtcgctgattggtatccgatccctgtcgcagctggaaacc
ccgccgatgaaccgtatgccggtacagacctatgtcattgaaaagaactttcagatggtg
aaggaaatcatacagcgtgagcttgccagaaacggacaggtgttctatctgtacaataat
gtaaaggaaatttataatgtggccagaaagcttcgggatgccatgccggaggtggaaatc
ggtgttgcgcacgggcagatgacacgggaggatatcgaggatgtcatgctgcagtttaca
gataataaatatcaggtgcttgtctgtacgaccatcattgaaaccggtattgatattccc
aatgccaacacgattttgattgaagatgctgaccacttcggattgagtcagctgtatcag
atcaagggaagagtcggcagaagcgatcgtcttgcctatgcgtatctgatgtattccccg
caaaagcaattaagtgagattgccatgaagcgcttaaaatccatcaaggaattcacgcag
ctgggcagcggttataaaattgccatgcgcgatctgaccatacgtggtgccggagatatg
ctggggccgcagcaggccggctttattgatacggtcggtattgatatgtatatcgaaatg
ctaaacagtgccatcatggagaaaaagggcatcaagccggaggtgaaaccggaaatgacg
aaggcgaatgtcaaggttgacgcatacattccaagcagctttgcaaccgaggattatgaa
aaaatcacattgtaccagcgtatggaggatattcataccaaaaaggagctgcttgccatg
atggatgaaatcaaggataattacggaaagctgccgaaggctgtacagctgttatttgaa
aagaagcggctggatatctgtatcaatgagccgcatgtggatgccttccgtgaactgcca
aaggcggttgagctggcgtttactagtgcatggtcaaacagcattgacggtgttgcatta
ttcgaaatgatgacaaccatatcaaaaaatataacgatacgctatacgaacggcaagatt
accatgaagctgccaaagcttaaggactggctctataccgtgattgaggtgctggaacgc
acagagccaatgggggaggaacaaacagcttcctga
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