Cruoricaptor ignavus: IMZ16_00425
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Entry
IMZ16_00425 CDS
T06873
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ16_00425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
civ03019
]
IMZ16_00425
Enzymes [BR:
civ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ16_00425
Messenger RNA biogenesis [BR:
civ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ16_00425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
AAA_19
CMS1
YibE_F
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QOR74794
UniProt:
A0A7M1T6S3
LinkDB
All DBs
Position
89012..90358
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AA seq
448 aa
AA seq
DB search
MHFVTFADFDLPVKILDALADLELFEPTPIQQKSFKPILSGRDVMGIAQTGTGKTLAYLL
PILKQWKFSKSGNPTVLILAPTRELAVQIEDVLKSLAVNLTARITAVYGGKNINTQKLLF
DEGCDILIGTPGRVMDLAIDNAVSLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMLKTRRQ
NILFSATMTEAVDEMLGEYFASPVEISLAKSGTPLEKIEQKAIPAENFNTKINLLKFLLD
ENPEMKKVLIFANNKKHADLLFTKMNEWQPGQFDVIHSNKSQNYRLRALQKFQNQEVRVL
ITTDVMARGLDISEISDVINFEVPEIPEQYIHRIGRTGRADKDGRALTFFTKKEELPLLE
IEMLMNREIEKSAFPAGVKIDPKKIESEKDEVRMKIPNRVELQENSGAFHEKKAKNLKVN
LGGPSKRMPKYNGSNRAQRKAKSRRKGK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atccattttgtgactttcgctgattttgatttgccggttaaaatcctggatgccctcgct
gatttggaacttttcgagcctacgccaattcagcagaaaagtttcaagcccatcctttcc
ggaagggatgtgatgggcattgcgcaaacgggtaccggtaaaactttggcgtatcttctg
ccgattttaaagcagtggaaattcagcaaaagcggaaatcctacggttttaattcttgcg
ccaacccgtgaattggcggtgcagattgaagatgtgctgaaatctttggcggtgaaccta
actgccaggattacagctgtttacggcgggaaaaatatcaacacgcaaaaattacttttc
gacgaaggctgcgatattttgatcggaacaccgggcagggtgatggatttagcgattgac
aatgccgtttcgctgaaggaagtgcagaaactcatcatcgatgaatttgacgaaatgctg
aaccttggcttcaggccgcagcttacgcatatttttgagatgctgaaaacgcggcggcaa
aacatcctgttttcagcgacgatgacggaagctgtggatgaaatgctgggcgagtatttc
gcatcgccggttgaaatttccctggctaaatccggaaccccgctggaaaaaattgagcaa
aaggcaattcctgctgaaaattttaacacgaagattaatctgctgaaatttcttctggat
gaaaatcctgagatgaaaaaggtgctaatttttgcgaataataagaagcacgccgatctg
ctttttacaaaaatgaatgaatggcagccagggcagttcgatgtaattcattccaataaa
tctcagaactacaggcttcgtgcattgcaaaagtttcagaatcaggaggttagggtttta
atcacgacggatgtgatggcccgaggattggatatttcggaaatctctgatgtcataaat
tttgaagtgccggaaatccctgagcagtacatccatcgtatcggaagaacgggccgtgcc
gataaggatggcagggcgctgaccttcttcaccaagaaagaagagctaccgctgctggaa
attgaaatgctgatgaacagggaaattgagaaatcggcatttcctgctggggtgaaaatt
gacccgaaaaaaatcgaaagcgagaaggatgaggtacggatgaaaattccgaaccgtgtg
gagcttcaggaaaacagcggtgccttccacgaaaaaaaggcaaaaaacctgaaggtgaat
ttaggtgggccatcgaaaaggatgccaaaatataacggatccaaccgtgcccagcggaaa
gcaaaatcacgaagaaaaggcaaataa
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